Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22970 1341 / 0 RSW4, AESP RADIALLY SWOLLEN 4, homolog of separase (.1.2) AT5G28550 80 / 1e-15 unknown protein AT4G24300 72 / 5e-14 Peptidase C50, separase (.1) AT4G22440 42 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009044 [exp] 241 / 7e-65 AT4G22970 177 / 1e-44 RADIALLY SWOLLEN 4, homolog of separase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G021700 [exp] 1839 / 0 AT4G22970 1738 / 0.0 RADIALLY SWOLLEN 4, homolog of separase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [flax] [poplar] Peptidase_CD PF03568 [flax] [poplar] Peptidase_C50 Peptidase family C50
Representative CDS sequence Show only first row Show all	>Lus10006990 pacid=23165443 polypeptide=Lus10006990 locus=Lus10006990.g ID=Lus10006990.BGIv1.0 annot-version=v1.0 ATGGCTACTGCTCTTCCAGAAGACGCTCTCATTTCGATACTCCAATCCTCAACTTCCCCGCCGATCTTCTCCCCATTCTCCGATTACCTCCAGCCTTTCT CCGATTACCTCAAGAACAGCAAATCCAGAGCCCGAAAACCCCGCGATCCCCACTCCAATACTACCATCCTCCGACCTCTGGCCAAGCGGTTTTCCCCTTT CCTCAATCGATGCCTTATTGTTCTCGCAAAGCGTTTCTCCGCATTGAAACCGGAATCCCCTCCTCCGGCACCTCCGGACTACATTTTGGAACTGTTCCGT ACATACAGGCTGTGTTTGGACTGCGTGGAAGTGGTGTCCTCGGAGCTGGCGGGTAAGCCCTACGCTATGTATTTGCAGAGTGCGAGGCTTTTGTATTACT TGCTGGAGTGGGGGATGTATGAGGAGGTCAAGGATGTTGCGTTTGGGGTTTTGCAGAGGCTTAGGGTTTTGGAATTCGGGGCGGGGAAGAATGGTAGTAA AGCTGGGAAGCTTTTGCCGGATGTAGTGCAGGGTCGGGATGATGCAGTATTCGCTAGGCTGGTAGTGGAGGTGGTAATTTCCATTGTTAAGTGCTTGGCT TCGGGCCGAAGTTCAGTTGATGATGACTATAGAAAGGTTATGATATTGGTGGAAGAAGTTAAACCCTGGTTCAGGGTGCTAGACGCAAATATATACCAGA GCAAGGATATGGCTATGGCAACCTACACAGGAAAATGCGCTCAACATCTTGTTGGAAAATTATCAAATTTCGATGGAGGTTTAGTATCTACATTCTGTCT GATGACATTAGACTGGTATGCCAAGTCATCTGTGAAGGATCAGATGTTTAAGTTTTCCTGCAGGACATGTTCATCACTGTTTCTGTTTCATGAAAATATG CCTTCAGTTACGCTTGAAATTTTATCAAGCATTCTGAATTCTCTTGCCTGCGAGTGCAAGGTTGGAACTGGAACTTGGCAAGTGGAGTTTATTGACTTTG TTTCTTACTGTGCTTCTAAATGTCAGCGGGCAAGTACAATTTTTTGTAGTACTGTTGCTGACCGTCTGAATGACTTAGCTGATAATTTGTCTCAGGTTAC AACACCAACAAATTTGTTCATCAGGCTTTATTCTGTAGCAATGTGCTTTAACAATCGTGTTCATAACTCTAGGGTAGCTGACGCTGCATCCTCCACTGAC AAGCAAAAAGATCACCAATCTTCCAGTTTACTTCATGATGGAACTGAACTTAGCAAGATCGCACCTTTTCTAGGATCCTTGAAGAGCTACATTTATGATG ATATTATACCGAGTAGTGAAACATCCAGTTCTGAGAACCATTCCCCAAGTCAAAAATCTTTGCGATCAGCTGGAATTGCTTCAACTCCCACTCAGAAGAG TGGAGATGCTTATTGTGTAGCTTATTTGAATCTGCTGAGATTCTTGTGTCAACCTCTTGCTGAAGTAGTAAATTCGCAGAAGGAGCGCATCCTTGCTGAA TACTATGCTCCATCTGTGTTTTCTGGGCTGTGTAGTATCCTGGAAGCCTTCAACCAATTCTGCTATATTTCGTTATCTTTCCAAAGCAGGGAACACAGAA AAGGGCAAGGAGCTGATGATGGATGTGATTTCAACAAGGGCAAAAATGTTCTTGCTGTTTCTCTGGCTGCATTTATTCTTGCAATCAAAACAAAACATGA TTTGCATAAAACCATGGATCTTTTCAAGCTGGTCATTTTTAGTGATTGGATTCGACCTGAGGGTCTCAAATACTTGAACACAAGACTCGACTACATTGGT GGCGTTTTGTATGATCAGAAACAATTGAGTGAGGCTTCGAAGGCTCTAAAATTCTGCTGCAGGGCAGGGTGGGCTTCTCTTAGAATACATTGCCAGAATC GGGTTCAAGGTGATCCTGCAGAAGATGATATTCTTGATTCTGTCAAAGAGACATGCAGACAGACAGTTTTTCTTCTAGACGTCCTCAGCCAATGCGAAAG CATGAAAATTCATAAGAGAGTTGTTGAAAGTCTTGAAAGTTGGTCAGTTGTTGAGGAATTATCTACAAAGGTTGAAGCTCTGGTTCCTATAGTGAAACAA TGGGTTAAGATTCAATGCGAACTAAGCAAGAGCATGGGTGTGGACTATAGCGCTCCAACTTTGCATTGCTTGCTAGGTTCTTCTGCAAGAATCTCAATAA GCTCAATTGGCAAACTCTTACAGCAGGAGCTTCTTGTTTATGAGAGGATGGAAAACACGTACCCTGAATTTTCACAGAAAATGCTGCTGAAAATAATTGA CATTCTCCTGCAAGATGTATATGTTAGAGATGAGGACTGTTTAGAAAGATCACGAATACTGCTCAGGAAGGGACGAGCACTAAGAGCTAATCCAGATCAA GCTCTAAGCAACAGCATTCAATGTGCATCAGAAGCAATTTCAGTGCTTATGTCTGGAACAATGGTAGATGGAAGTTCAGTTTCTCATCAATTAGCCATGG CACATAGTTTGCGGGCTCTCTGCATACAAGAAGCAGAACCAAGTTCAAAGGAAGTCATTCGAGATATTGAAGTAGCAATAAATCTATGGTTGAGCATTCC CCAACCCAACGTCCATGATAACGGGTGTTCAATCATGGGTGATCCGATATACATATTGTGCAACATAGCCGATTTATTAGCAATAAAGGGTTTCACAGAA CTCAACAGAAATATCTATAGGCTCATGATTAGATTTTTTGAGTGGAGAAATGTGCCAATTGGAAAGTGCTTCAGCTTTCTATGGGGTAGTCGAAGGCTAA GCCATGGTCTTTGCATCTCTCCTATTGATGAAGCATTCCTCACTGACATCTCATGCAATTCTGAAAAAAAGATCGATACCATGGCATTCTGGTTAAATTG CCTAGAAGCATCCATGCCTTTATTAGCTGGTTTCCAGCTCAAACTATCCTACTGTTCTTCTTGTTCCTCGTCCAATAATGCTTCTTGTTCGCAATTAGAT GTTGCAGTTGATGTTGCGAAGAGAGCTACTTCTGACCTTATTTCTGATGGTACTCTCAACAGGCGGTCAGCTTTCATGGCTGCAATTCTCTACTATGATT TATGCGAAAGACTCGCTGCAAGTGGGCAGTTAGTTGAGGCTGTGTCTTGTGCAAAACAAGCATATAAATTGCGCTTTAAGCTCTTTCAAGATAACTTCAC ATATCAAGATGGAAAGTGTGGTGAACGGTTGGATCCCCTGCAAAAGGCCATCAAGGACATTCGAATGCACAAATCAACTGCAATTGAAATTTGGTCTTCT GACAGGACTTCACAGGATGTGGAAACTTATTATCTTAGTCCGTGGAAAGTGCTTCAATGTTATCTTGAGAGCACTCTTCAGGTTGCTGTCGTTCTTGAAA CGATTGGACATGGAATAGAAGCAGAGTCATTTCTATTGTGGGGAAAAGAAATCTCTTGTTCCTTAAGCTTGCCAGTATTCACTGTGGCATTTTCTACTGT TTTAGGAAAAATATATTGTGAAAAAGGGTCTTGGGATCAGTCAGAAGAGGAACTTCAATGTGCCAAAGAAATTTTGTCATGCAATGACACTGCTATATCT TGTTCAAAGTGTAGACTCATGCTAGAAGTCTCTGTCAATCAACAGCTTGGTGATTTGACTCGTAGCCGCTTAATCATTACCACCAAAGATGTTTCGCATG AATTGTTATCCTTGGCAGAAGGCTTGTATACATCAGCTCTAGATAAATTGAACGAGCCAGAGTGGAAAAATGTTGTTAGTTGCCCAGAGAAGGTCGAAAA AATAACAGAAAAGGTGATTGATTGTTATGTTGCAACCTGTCCAGAGGAAATGAGTTCTCTTCCATCCAAGGCAGAGCCTGAAGTGAAGAAAAGAGTCAGA AGGCCTAGACAAACTAGAAATGCACAAATAGCTTTACCCGGAGAGAATTTGTCTGAGGCATGCCATAACACAAGAGTAACTCGATCTAGGTGCCGTTCTC TTCAGCATACTGTAGATGGTTGTGTTGGGTCACAAGCTGGAATCTCCCAAGTATCTGAGAGCAAAAGTGCTTGTACGGCTGAGCCAAGTGGTGAAAGGGT TTTACTTCCAGAAGGAAAAGGTTGTAAAATAAACTATGAAGGTGTATGCATTTGCAACAACACTAAGTGCTGTAACTGTTTGTCACTGGAAGTGCACAAA TCTGGATCAGTGAGTCAATTCATTCAGATGAGGTGGGAGTTCGCTCGTAGGCGACTTTCTGTGGGAGTATTTAATGGCATAGGAATGTGCAAGGGAATAC GGGATCAAAATCATGAAGAACACAAGGTTTCTCTACAAAGTTTGTCTGTCCTATTGTGTCGAAACCCATTCAGGTCGACTCAAATTTCTGATCCACCAAC TGACCTACTAAATCTGATGGTCAAGGAGTTTTTTCGGAACACATTTGCCGTTCAGATTGTGGAAGTGCTTTACAACCTATGCCTGCTCACTTTTAAAAGT TACTACATCAAGGGTAACAGGAAAACTTGCTGCAATTTTTCTTCCATCGAGTTGCCAGAAGCAGTGCATTGGTTGATGGAGGCATTTGTACTTTGTCGGG AGGTTCCTTATCTTTTGAAGAAGGTCTCCAGGTTGCTCTCTGCCATATATATTATTTCCACTTCGAAAGGGCTATTCTCTTTGCCTTCGTGCAATAAAGT TCTCTCAGAAAGCCATTGGGCGTCATATTTTCATCAGGCTTCACTTGGCACCCATCTTAATTACCAGTTCTTTATAAACAAGACCCAGAAAATCAAACCC CGTGGCGTTCTGGATGGGCAGGATATATCGGCAGGTGCCTTGATAAATGCAGAATCATACGACTTACCAAGGGTTGGGCCAGCATCTGTTGATGAATTGG AAAATTTCGTCACTGAATTTTTTGCAGACCTTCCCAATACCACAATCATCTGCATAAGCTTAATCTCCGACTCATTAACAGTTTTGTTGCAAGAACTAAT GGCGTACCCTCCAGATGTTAAAGCATGGCTACTTCTATCACGCTTAAACTCTACAGATCAACCTCTGGTGACCCTTCTTCCCCTGTACTCCAGTTTGGAA GTGACTTCGGGTGATGACAGTGGAGCAGAAAGTGTTTGCTCGAGCAAAAAGTGGCACTGCCCCTGGGGTACTACTGTCATTGATGAAGTCGCTCCAGTAT TTAGAAATATATTGGAGACAAGTTACTTGACCTCTTCAACCTTTCCACGAGAAGATTCCATAGAAAACAGAAATCTATGGTGGAATCGAAGAAAGAGACT AGATTGTCAACTTGATGAATTTTTGAGAAGCATAGAAGATAAGTGGTTTGGTTCATGGAGGATTCTACTTTCTGCCGGACTATCCAACTCGAAGCAAATG GATGTATTAGAAAGCAGGCTAATTAGAGAACTGAAATCTAAGTGCAAAGTGGTCGTAAATCAAATTCTGCTCAAGGCTATACTTGGTGCAGAGGATGGGT TAGATGCAGAAACTTGTATCAAGCAATTATTTTCTCTGAAGAAGGGTTGCGCAATTGGTCAACCTGGATCATCTGACAAAGGAAAGTTTGCTGAAGACTC TGAAGCTGTCAAAAGACAAACTGAGTTAGCTGTTAACTTGCTATGCGAGGCTCGGAATAAGGTTAAAGAGTTGCAAGAGCAGATCTCTGTCTCTAGAGAA CCAGCAATTTTGGTGCTAGATCACGAAGTGCAGATGCTTCCATGGGAAAGCATACCGACATTAAGAAGCCAGGAAATTTATCGCTTACCAACGCTCGGGA GCATCTCGTGGATACTTGATATGAGCCTCAGAAATAGAGAATCAGCAGGGACTATCTCTGCTGCCTTCCCTTTCATTGATCCCTTGGATGCATTTTATCT ATTGAATCCAAGCGGCGATCTGAATTATACACAAGCAGAGTTTGAGAAGTGGTTTCTTGATAAAAAATTTGAGGGAAAGGCTGGATCTGCTCCACCTGCA GAAGAATTAGCTGTGGCCTTGAAGAGTCACGACCTTTACATATATTTAGGCCATGGAAGTGGTGAACAATACATATCAGGAGGGGAGATTCAGAAGCTCG AAAAGTGTGCTGCTACACTTCTAATGGGATGCAGCAGCGGTTCTCTATCCTTAACCGGATCTTACATGCCGAAAGGCGCCCCGCTCTACTATTTGCAAGC CGGATCGCCAGTTGTCGTGTCGAATCTCTGGGAGGTGACAGACAAAGACATTGATAGGTTCTGTAAGGCAATGCTCAATAGTTGGTTGCAAGAACGGTCT AATGCTTGCACCGATTCCCTACGGGAGAACCTTGCCAAAGAATTCGAATCAATAAACATTGGAGTTGGTGCTGGTAAAGGCAAGAAGAAAGCCGTTGCCT CGAAGAAGAAAGCTTTGAAACCTGAAGAATGTGACAATGGTAGGCCTACGATCGGGTCGTTTATGGCTCAGGCTCGTGAAGCATGCAAGTTGAAGTACTT GATCGGAGCTGCACCGGTTTGCTACGGAGTTCCGACGAGCATAAGGAGAAAGAACACTACGAATTGA
AA sequence Show only first row Show all	>Lus10006990 pacid=23165443 polypeptide=Lus10006990 locus=Lus10006990.g ID=Lus10006990.BGIv1.0 annot-version=v1.0 MATALPEDALISILQSSTSPPIFSPFSDYLQPFSDYLKNSKSRARKPRDPHSNTTILRPLAKRFSPFLNRCLIVLAKRFSALKPESPPPAPPDYILELFR TYRLCLDCVEVVSSELAGKPYAMYLQSARLLYYLLEWGMYEEVKDVAFGVLQRLRVLEFGAGKNGSKAGKLLPDVVQGRDDAVFARLVVEVVISIVKCLA SGRSSVDDDYRKVMILVEEVKPWFRVLDANIYQSKDMAMATYTGKCAQHLVGKLSNFDGGLVSTFCLMTLDWYAKSSVKDQMFKFSCRTCSSLFLFHENM PSVTLEILSSILNSLACECKVGTGTWQVEFIDFVSYCASKCQRASTIFCSTVADRLNDLADNLSQVTTPTNLFIRLYSVAMCFNNRVHNSRVADAASSTD KQKDHQSSSLLHDGTELSKIAPFLGSLKSYIYDDIIPSSETSSSENHSPSQKSLRSAGIASTPTQKSGDAYCVAYLNLLRFLCQPLAEVVNSQKERILAE YYAPSVFSGLCSILEAFNQFCYISLSFQSREHRKGQGADDGCDFNKGKNVLAVSLAAFILAIKTKHDLHKTMDLFKLVIFSDWIRPEGLKYLNTRLDYIG GVLYDQKQLSEASKALKFCCRAGWASLRIHCQNRVQGDPAEDDILDSVKETCRQTVFLLDVLSQCESMKIHKRVVESLESWSVVEELSTKVEALVPIVKQ WVKIQCELSKSMGVDYSAPTLHCLLGSSARISISSIGKLLQQELLVYERMENTYPEFSQKMLLKIIDILLQDVYVRDEDCLERSRILLRKGRALRANPDQ ALSNSIQCASEAISVLMSGTMVDGSSVSHQLAMAHSLRALCIQEAEPSSKEVIRDIEVAINLWLSIPQPNVHDNGCSIMGDPIYILCNIADLLAIKGFTE LNRNIYRLMIRFFEWRNVPIGKCFSFLWGSRRLSHGLCISPIDEAFLTDISCNSEKKIDTMAFWLNCLEASMPLLAGFQLKLSYCSSCSSSNNASCSQLD VAVDVAKRATSDLISDGTLNRRSAFMAAILYYDLCERLAASGQLVEAVSCAKQAYKLRFKLFQDNFTYQDGKCGERLDPLQKAIKDIRMHKSTAIEIWSS DRTSQDVETYYLSPWKVLQCYLESTLQVAVVLETIGHGIEAESFLLWGKEISCSLSLPVFTVAFSTVLGKIYCEKGSWDQSEEELQCAKEILSCNDTAIS CSKCRLMLEVSVNQQLGDLTRSRLIITTKDVSHELLSLAEGLYTSALDKLNEPEWKNVVSCPEKVEKITEKVIDCYVATCPEEMSSLPSKAEPEVKKRVR RPRQTRNAQIALPGENLSEACHNTRVTRSRCRSLQHTVDGCVGSQAGISQVSESKSACTAEPSGERVLLPEGKGCKINYEGVCICNNTKCCNCLSLEVHK SGSVSQFIQMRWEFARRRLSVGVFNGIGMCKGIRDQNHEEHKVSLQSLSVLLCRNPFRSTQISDPPTDLLNLMVKEFFRNTFAVQIVEVLYNLCLLTFKS YYIKGNRKTCCNFSSIELPEAVHWLMEAFVLCREVPYLLKKVSRLLSAIYIISTSKGLFSLPSCNKVLSESHWASYFHQASLGTHLNYQFFINKTQKIKP RGVLDGQDISAGALINAESYDLPRVGPASVDELENFVTEFFADLPNTTIICISLISDSLTVLLQELMAYPPDVKAWLLLSRLNSTDQPLVTLLPLYSSLE VTSGDDSGAESVCSSKKWHCPWGTTVIDEVAPVFRNILETSYLTSSTFPREDSIENRNLWWNRRKRLDCQLDEFLRSIEDKWFGSWRILLSAGLSNSKQM DVLESRLIRELKSKCKVVVNQILLKAILGAEDGLDAETCIKQLFSLKKGCAIGQPGSSDKGKFAEDSEAVKRQTELAVNLLCEARNKVKELQEQISVSRE PAILVLDHEVQMLPWESIPTLRSQEIYRLPTLGSISWILDMSLRNRESAGTISAAFPFIDPLDAFYLLNPSGDLNYTQAEFEKWFLDKKFEGKAGSAPPA EELAVALKSHDLYIYLGHGSGEQYISGGEIQKLEKCAATLLMGCSSGSLSLTGSYMPKGAPLYYLQAGSPVVVSNLWEVTDKDIDRFCKAMLNSWLQERS NACTDSLRENLAKEFESINIGVGAGKGKKKAVASKKKALKPEECDNGRPTIGSFMAQAREACKLKYLIGAAPVCYGVPTSIRRKNTTN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22970		RSW4, AESP	RADIALLY SWOLLEN 4, homolog of...		Lus10006990 [exp]	0	1
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Lus10023991 [exp]	1.0	0.9685
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10039167 [exp]	3.2	0.9659
AT4G38760			Protein of unknown function (D...		Lus10007578 [exp]	3.9	0.9569
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Lus10025046 [exp]	4.2	0.9601
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10030088 [exp]	4.9	0.9567
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043477 [exp]	5.7	0.9577
AT4G02110			transcription coactivators (.1...		Lus10001455 [exp]	7.3	0.9441
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10008428 [exp]	8.9	0.9286
AT4G02110			transcription coactivators (.1...		Lus10002431 [exp]	11.0	0.9199
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Lus10037018 [exp]	11.5	0.9090

Compare expression of checked genes

Lus10006990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.