Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18730 673 / 0 ATDGK3 diacylglycerol kinase 3 (.1) AT4G30340 671 / 0 ATDGK7 diacylglycerol kinase 7 (.1) AT5G57690 663 / 0 ATDGK4 diacylglycerol kinase 4 (.1) AT4G28130 258 / 6e-80 DGK6, ATDGK6 diacylglycerol kinase 6 (.1) AT2G20900 254 / 2e-78 DGK5, ATDGK5 diacylglycerol kinase 5 (.1.2.3.4) AT5G63770 120 / 8e-29 ATDGK2 diacylglycerol kinase 2 (.1.2) AT5G07920 117 / 2e-27 ATDGK1, DGK1 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015514 [exp] 864 / 0 AT4G30340 707 / 0.0 diacylglycerol kinase 7 (.1) Lus10019987 [exp] 863 / 0 AT4G30340 713 / 0.0 diacylglycerol kinase 7 (.1) Lus10008907 [exp] 402 / 6e-140 AT2G18730 322 / 1e-109 diacylglycerol kinase 3 (.1) Lus10031612 [exp] 241 / 9e-73 AT2G20900 719 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10039747 [exp] 233 / 2e-70 AT2G20900 751 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10033732 [exp] 233 / 2e-69 AT2G20900 730 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10018527 [exp] 193 / 4e-55 AT2G20900 681 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10008906 [exp] 179 / 4e-54 AT2G18730 78 / 1e-17 diacylglycerol kinase 3 (.1) Lus10012719 [exp] 112 / 1e-25 AT5G63770 957 / 0.0 diacylglycerol kinase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G096700 [exp] 783 / 0 AT2G18730 702 / 0.0 diacylglycerol kinase 3 (.1) Potri.006G174700 [exp] 746 / 0 AT4G30340 670 / 0.0 diacylglycerol kinase 7 (.1) Potri.001G408500 [exp] 268 / 3e-83 AT2G20900 695 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Potri.013G148500 [exp] 263 / 4e-81 AT2G20900 765 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Potri.005G070900 [exp] 121 / 5e-29 AT5G63770 897 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.007G097900 [exp] 112 / 5e-26 AT5G63770 933 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.006G172400 [exp] 93 / 5e-23 AT5G57690 83 / 2e-20 diacylglycerol kinase 4 (.1) Potri.012G066300 [exp] 87 / 1e-17 AT5G07920 1154 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Potri.002G162900 [exp] 46 / 6e-05 AT2G46090 492 / 3e-175 Diacylglycerol kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00609 [flax] [poplar] DAGK_acc Diacylglycerol kinase accessory domain CL0240 [flax] [poplar] PFK PF00781 [flax] [poplar] DAGK_cat Diacylglycerol kinase catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10006991 pacid=23165445 polypeptide=Lus10006991 locus=Lus10006991.g ID=Lus10006991.BGIv1.0 annot-version=v1.0 ATGGGTTCACCGACTAAGACGTCGGCGACGGCGGGACCGACTACGACGTCGGCGACGGCGGAGAATTCCTCGACGACGACGACAAGGATCGTGGCGTCGA GGTCGTCGATGATTGACTCGTTAAGAGGATGCGGCTTATCGGGCGTCAGAATCGACAAGGAAGTCCTGAGGAAGAAGCTCGTGATGCCGGAGTACCTCCG GCGAGCTATGGCCGACGCAATCAAGTCCAAGGACGCGGCGGAGGCTTGCGATCGTCACCACAGTAGTACCTCCGAACTCAGAGTCCCCGAGGAGGCTCCT CAGTGCGCCATGGTTGTCTTCGTCAACTCCAAGAGCGGCGGCCGCCATGGCCCCGAACTCAAGTTGCGACTCCAGGAGTTGATTAGCGAGGAGCAGGTGT TTGATCTATCAGATGTGAAGCCACACGAATTTGTGAGGCATGGATTGATGTGCATTGAGAAGATGGCTACACTTGGTGATCTTTGTGCTAAAGAGTGTCG TGAGAAAATGAGGATTATGGTTGCTGGAGGGGATGGTACTGTTGGTTGGGTATTGGGAAGTCTAGCAGAGCTTAACAAAGAGGGAAGGCAACCGATTCCT CCAGTAGGGGTGATTCCTCTTGGTACAGGCAATGACTTGGCTAGGAGTTTCGGTTGGGGAGGTTCATTTCCTTTTGCTTGGAAATCGGCTGTCAAACGAT CTCTTGATAGGGCTACTGCTGGGCCAGTTTGCCGTCTGGACAGTTGGCAGGTCATAGTGTCGATGGCAGAAGGGCAAGTTGTGGATGCTCCTCATTCCTT AAAGGCTACTGAAGATTGTCATCTTGATCAGGGTTTGGAAGTCGAGGGTCAGTTGCCTGAGAAAATGGCCTGCTATGAAGGAGTGTTTTATAATTACTTC AGTATAGTTACACCTTATAAAGCTTTACCAGCCTTTTCTCGTAAAGGAAATGAACATGGTTCCTTCCAAAAGCCTAAATTTGCTAGCTTTATTCCTACAG GAATGGATGCTCAAGTTGCTTACGGTTTCCACCATTTGCGTAATGAAAAACCTTACCTTGCACAAGGTCCCATTGCAAATAAGTTGATATACTCTGGTTA CAGTTGCACTCAGGGCTGGTTTCTAACTCCTTGCATTAGTGATCCCAGTCTGAGGGGACTAAAAAATGTCATAAGGATGCACATTAAGAAGGTTAATTGC TCAGAATGGGAGCAGATCCCTGTTCCAAAAAGTGTAAGAGCTATAGTTTGTTTGAACCTTCACAACTATGGAAGTGGAAGGAATCCATGGGGTAAACCAA CTGCCAACTACATGGAGAAGAAAGGCTTTGTCGAGGCTCATGTCGACGACGGTCTGATAGAAATATTCGGGTTAAAACAAGGGTGGCATGCTTCCTTCGT CATGGTCGAACTCATATCCGCAAAGCACATAGCCCAGGCTGTAGCGATTAGACTCGAGATCAGAGGCGGGGAATGGAGAGACGCGTACCTTCAGATGGAC GGGGAGCCATGGAAGCAGCCGATGAGTAAGGAGTACTCGTCGTTTGTGGAGATAAGGCGGGTGCCACATCAATCGGTCATGATCAATGGGGATTGA
AA sequence Show only first row Show all	>Lus10006991 pacid=23165445 polypeptide=Lus10006991 locus=Lus10006991.g ID=Lus10006991.BGIv1.0 annot-version=v1.0 MGSPTKTSATAGPTTTSATAENSSTTTTRIVASRSSMIDSLRGCGLSGVRIDKEVLRKKLVMPEYLRRAMADAIKSKDAAEACDRHHSSTSELRVPEEAP QCAMVVFVNSKSGGRHGPELKLRLQELISEEQVFDLSDVKPHEFVRHGLMCIEKMATLGDLCAKECREKMRIMVAGGDGTVGWVLGSLAELNKEGRQPIP PVGVIPLGTGNDLARSFGWGGSFPFAWKSAVKRSLDRATAGPVCRLDSWQVIVSMAEGQVVDAPHSLKATEDCHLDQGLEVEGQLPEKMACYEGVFYNYF SIVTPYKALPAFSRKGNEHGSFQKPKFASFIPTGMDAQVAYGFHHLRNEKPYLAQGPIANKLIYSGYSCTQGWFLTPCISDPSLRGLKNVIRMHIKKVNC SEWEQIPVPKSVRAIVCLNLHNYGSGRNPWGKPTANYMEKKGFVEAHVDDGLIEIFGLKQGWHASFVMVELISAKHIAQAVAIRLEIRGGEWRDAYLQMD GEPWKQPMSKEYSSFVEIRRVPHQSVMINGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18730		ATDGK3	diacylglycerol kinase 3 (.1)		Lus10006991 [exp]	0	1
AT2G18730		ATDGK3	diacylglycerol kinase 3 (.1)		Lus10008907 [exp]	1.4	0.7944
AT3G09830			Protein kinase superfamily pro...		Lus10037980 [exp]	14.8	0.7023
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10034227 [exp]	16.7	0.7040
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039162 [exp]	21.6	0.6796
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10029038 [exp]	24.2	0.6763
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10020721 [exp]	26.8	0.6040
AT5G06440			unknown protein		Lus10013601 [exp]	26.9	0.6363
AT2G44500			O-fucosyltransferase family pr...		Lus10037475 [exp]	31.4	0.6321
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009627 [exp]	31.6	0.6629
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10000806 [exp]	32.9	0.6147

Compare expression of checked genes

Lus10006991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.