Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28020 383 / 1e-132 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008905 [exp] 420 / 3e-147 AT4G28020 316 / 8e-107 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G096900 [exp] 455 / 3e-160 AT4G28020 435 / 2e-152 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01980 [flax] [poplar] TrmO tRNA-methyltransferase O
Representative CDS sequence Show only first row Show all	>Lus10006992 pacid=23165423 polypeptide=Lus10006992 locus=Lus10006992.g ID=Lus10006992.BGIv1.0 annot-version=v1.0 ATGGGTTCAGACCAGCTCTCGAAATGGTTGATACCCATCGTTACTGTAGCGCTTGCAGCTTTCTCTACCTCCGCAGCCATATCTCTTCATCGCTGTAGGA AGAAATCGGAAGAATTGGAATCCAAGGTGGAAGAGCTTGAGCTCTCTCTCAAATCGTCCATTGAAAAATCCGCAGCTGAGAGGCAAGGTCGAATTCGAGC TCAACAGACGTTGAGGAAAGCTTTAGCTGAGCAGAAGTCTGAGAATTTGCAGCATAATTCTTACCCGATGGCGCCAATTGGTACAGTCCAGTCTTGCTTC TCAACTAGAAATGGGACTCCAAGGCAACCTTTGGTTGTACCAATGGCTAGAGCAAGCTTAATGTTTGATCCATCTAGGGTTCCTCCAGCATCACTTGAAG GTCTGACTGAGTACTCTCATTGCTGGATAATATATGTGTTCCACTTGAACACGGATCTGGAGAAGCTGTGGAAGGAACCATCTAGATCAAAGTTCAAGGC CAAGGTTAGAGTTCCTAGGCTGAAAGGTGGAAGAATGGGAGTTTTTGCTACTAGGACTCCTCACCGTCCTTGCCCTATCGGCCTCACTGTTGCAAAGGTG GAAGCTGTACAGGGAAACATGGTTCTGCTATCTGGTGTTGATCTAGTTGATGGGACTCCAGTTCTTGACATCAAACCTTATCTACCATACTGCGACAGCA TCACTGAAGCTTCTGTGCCTAAGTGGGTAATGGAGGACAACGTGCTAGCAGTTGCCTCTGTTAGCTTCTCTGATAGCTTCGCTTCCTCCCTCGACGATTG CTGGTTGAGAATGGGAAAGAAGTCACTGTATGCATCTGCAGAAGAGCTGCAATGCCTGATCAAGCAGGTTCTTTCGTGGGACATTCGGTCTGTATCGCAA CGGAACCAACCTCACAATGCTGAAGGACACAACCCAGATGAAGAAAGCAATGACCACAATGATGACGATATCCGGTCCGATTCTACAGACATTATCTATC ATCTTATCTTGGAGGGAGTTGTGTTCGCATACAAAATCGACGAAACTGGAAATGTGGTTGTTGATAAAGCTGCTGCTGTTGTGAACTCCTCGCCCGACAT CCCAAATGGTGAATTACGAAACCGAGCTAGGTTGTTTCATCCAAGCTAA
AA sequence Show only first row Show all	>Lus10006992 pacid=23165423 polypeptide=Lus10006992 locus=Lus10006992.g ID=Lus10006992.BGIv1.0 annot-version=v1.0 MGSDQLSKWLIPIVTVALAAFSTSAAISLHRCRKKSEELESKVEELELSLKSSIEKSAAERQGRIRAQQTLRKALAEQKSENLQHNSYPMAPIGTVQSCF STRNGTPRQPLVVPMARASLMFDPSRVPPASLEGLTEYSHCWIIYVFHLNTDLEKLWKEPSRSKFKAKVRVPRLKGGRMGVFATRTPHRPCPIGLTVAKV EAVQGNMVLLSGVDLVDGTPVLDIKPYLPYCDSITEASVPKWVMEDNVLAVASVSFSDSFASSLDDCWLRMGKKSLYASAEELQCLIKQVLSWDIRSVSQ RNQPHNAEGHNPDEESNDHNDDDIRSDSTDIIYHLILEGVVFAYKIDETGNVVVDKAAAVVNSSPDIPNGELRNRARLFHPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28020			unknown protein		Lus10006992 [exp]	0	1
AT1G55880			Pyridoxal-5'-phosphate-depende...		Lus10043164 [exp]	14.4	0.6575
AT2G02880			mucin-related (.1)		Lus10030486 [exp]	40.0	0.6745
AT4G32175			PNAS-3 related (.1)		Lus10002375 [exp]	58.8	0.6550
AT3G61370			Protein of unknown function (D...		Lus10001364 [exp]	67.5	0.6636
AT1G71870			MATE efflux family protein (.1...		Lus10027277 [exp]	113.5	0.6202
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Lus10006559 [exp]	169.3	0.6241

Compare expression of checked genes

Lus10006992 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.