Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008904 [exp] 281 / 2e-94 ND 38 / 0.007
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006993 pacid=23165418 polypeptide=Lus10006993 locus=Lus10006993.g ID=Lus10006993.BGIv1.0 annot-version=v1.0 ATGGATATTGCATCCCCAAGTGCCCAAGAACTCAGCAAATTACTGTACGGTGTTACTGTCAAGTATGGGGTTAATTTCTCAATTCAGGGGAAACCTACTA TTGCTACTCCTGCAGCAGCGCCTGTACAAGGAGATGACACTTCACAGTCCTTATTGATTGACAGCCAGAAAGCACCCACAAGTGAACAATTTGCTAACCA TACCGATCCAGAGGAAGCTGTTCTGGTCTATGGAGGTCAACAAACCAACACTCATGGAACTTCTTCTATCAGTCCCTTCGCAATTGAGCAGGTTCAGGTT CGAAGTTTTGCATCAAGCGTAGAGAATATGGAGGGACAAACTGCAACCTTAGACACCGTGGAGGGACAATATCTGTTTCGATGTCTGAGACAAACAGATC GTTATGAACATCTCAACAGGATTCCCCGCTGTATAAATGCATGCGGGGGTTTCGTGCTCATCCTCTGTGTCTTGATCATTGAGATTGCTTCAGCGATTTT TGAACAGTTGGGACTACATTTACCGGGCTTTATAGCGGCTTATCTGGGATTAACTCTTTCCCTACTTGATCTTTTTCCCTACTTGACGTTGCATTATCTG TTGAATGGTGCTACGGTATTCCTCCTCACAGGACGTTCGGCTCTGTTCTCGACTACTTCGGATTAG
AA sequence Show only first row Show all	>Lus10006993 pacid=23165418 polypeptide=Lus10006993 locus=Lus10006993.g ID=Lus10006993.BGIv1.0 annot-version=v1.0 MDIASPSAQELSKLLYGVTVKYGVNFSIQGKPTIATPAAAPVQGDDTSQSLLIDSQKAPTSEQFANHTDPEEAVLVYGGQQTNTHGTSSISPFAIEQVQV RSFASSVENMEGQTATLDTVEGQYLFRCLRQTDRYEHLNRIPRCINACGGFVLILCVLIIEIASAIFEQLGLHLPGFIAAYLGLTLSLLDLFPYLTLHYL LNGATVFLLTGRSALFSTTSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006993 [exp]	0	1
AT4G25150			HAD superfamily, subfamily III...		Lus10006849 [exp]	6.4	0.8697
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016223 [exp]	20.3	0.8568
					Lus10010608 [exp]	24.4	0.8552
AT1G21390		EMB2170	embryo defective 2170 (.1)		Lus10019210 [exp]	33.8	0.8527
AT4G21340	bHLH	bHLH103, B70	basic helix-loop-helix (bHLH) ...		Lus10005959 [exp]	39.0	0.8208
AT3G22490			Seed maturation protein (.1)		Lus10006121 [exp]	46.3	0.7844
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030590 [exp]	46.6	0.8382
AT3G29250		AtSDR4	short-chain dehydrogenase redu...		Lus10022562 [exp]	50.2	0.8296
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016211 [exp]	58.3	0.7958
AT3G52360			unknown protein		Lus10029348 [exp]	67.2	0.7722

Compare expression of checked genes

Lus10006993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.