Plant FIBer expression Database

Lus10006994 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57700 349 / 5e-119 BNR/Asp-box repeat family protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008903
[exp]
458 / 4e-162 AT5G57700 497 / 5e-178 BNR/Asp-box repeat family protein (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G097100
[exp]
369 / 4e-127 AT5G57700 509 / 0.0 BNR/Asp-box repeat family protein (.1.2.3.4)
Potri.006G175161
[exp]
68 / 9e-14 AT5G57700 43 / 1e-05 BNR/Asp-box repeat family protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Lus10006994 pacid=23165410 polypeptide=Lus10006994 locus=Lus10006994.g ID=Lus10006994.BGIv1.0 annot-version=v1.0
ATGAGCAAGGACTGCTCTACTTGGTCACCACCATTGAGGGCTGAGTTCACCTTTGTAGCGAATTCTGCACCGTTCAGCAGTTGTCATGCATCTATCATTG
TTGAGGTAGAGAAAGGCCACTTCTTGGCTGCCTATTTTGGAGGTACATCAGAAGGAGCTCCTGATGTCAAAATTTGGATACAAACTTACAAGGATGGAGT
TTGGCAGGCTCCCATGATTGCTGATGAACAGCCCGGTGTGCCATTGTGGAACCCGGTTCTATTCAAGCTACCCTCAGATGAGGTTTTGCTGTTCTACAAA
ATTGGGCAGGAGGTGCAAAAGTGGAGTGGATGTATGAAGAGATCGTACGATAAAGGGTTACTTGGACAGCAAGAGAACAACTTCCTCCAGCCTCTCTTGC
TCGAAACCGGTTTGTTGCTCTGTGGGTCATCAGTCGAAAGCTGGAACAGGCAAGACATGGAAGAAGTATGGCTTAAAAAGAGCTTACAGCAGATGCAGGC
AAGACATGGAAGAAGTATGGCCCGATCCCTCAGTGTGATTCAACCTGTACTATACCGGACTACGAAGGGTACGTTGTGTGTTTTGATGCGATCGTTTGAT
GGAATCGACAGAGTATGCATCTCGGAATCGTTAGATGGTGGTGTGAGCTGGGGGTATGCCAAACCAACTGAACTTCCTAACCCAAACTCAGTTTTGATAT
CGTCATTTGGTTCATTGATAATCAGCATAGATGGAGTGAAGCTAAGAGATGGCAGGGTTCTACTTGCATACAACACAGCCTCAAGGGCTGTGCTTAAGGT
TGCTGTATCCGAAGACGAAGGAGATTCTTGGTGCGATGTTCTGACACTAGAAGATCAACAAGGCATGGAGTTCTCATATCCGGCAGTAATCCAGGATAGC
GACGGATTGGTTCACATCACTATTATAAGAGGACACAGATTAAGGGCTGTGTATGATCTTCAACAGGGAGAAGCTCGTCTACTCGCTACTGGAGCAGTAG
CATCAGTAGGATTCCCCATCTTGTACAGTAAACCCAAACTTGACAGTACCACCAGCTGGGGATGCAATATCCAGCTGGCATTCCCGGGAATTACTTGCAG
TTGCAGTAGCAAACGTGACACTGATACCCATCTGCTGAAATGA
AA sequence
>Lus10006994 pacid=23165410 polypeptide=Lus10006994 locus=Lus10006994.g ID=Lus10006994.BGIv1.0 annot-version=v1.0
MSKDCSTWSPPLRAEFTFVANSAPFSSCHASIIVEVEKGHFLAAYFGGTSEGAPDVKIWIQTYKDGVWQAPMIADEQPGVPLWNPVLFKLPSDEVLLFYK
IGQEVQKWSGCMKRSYDKGLLGQQENNFLQPLLLETGLLLCGSSVESWNRQDMEEVWLKKSLQQMQARHGRSMARSLSVIQPVLYRTTKGTLCVLMRSFD
GIDRVCISESLDGGVSWGYAKPTELPNPNSVLISSFGSLIISIDGVKLRDGRVLLAYNTASRAVLKVAVSEDEGDSWCDVLTLEDQQGMEFSYPAVIQDS
DGLVHITIIRGHRLRAVYDLQQGEARLLATGAVASVGFPILYSKPKLDSTTSWGCNIQLAFPGITCSCSSKRDTDTHLLK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G57700 BNR/Asp-box repeat family prot... Lus10006994
[exp]
0 1
AT1G53440 Leucine-rich repeat transmembr... Lus10005550
[exp]
2.2 0.8606
AT2G36290 alpha/beta-Hydrolases superfam... Lus10041666
[exp]
2.4 0.8677
AT3G53500 RSZ32, RS2Z32, ... arginine/serine-rich zinc knuc... Lus10009067
[exp]
2.4 0.8954
AT5G35180 Protein of unknown function (D... Lus10019068
[exp]
6.0 0.8432
AT5G22620 phosphoglycerate/bisphosphogly... Lus10009404
[exp]
8.4 0.8589
AT3G25840 Protein kinase superfamily pro... Lus10035032
[exp]
8.5 0.8602
AT1G05410 Protein of unknown function (D... Lus10004900
[exp]
8.7 0.8760
AT1G65420 NPQ7 NONPHOTOCHEMICAL QUENCHING 7, ... Lus10039937
[exp]
9.0 0.8557
AT1G16670 Protein kinase superfamily pro... Lus10019933
[exp]
10.4 0.8626
AT5G10700 Peptidyl-tRNA hydrolase II (PT... Lus10020143
[exp]
12.2 0.8545

Lus10006994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.