Plant FIBer expression Database

Lus10006995 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G22758 106 / 2e-29 unknown protein
AT2G27830 38 / 0.0005 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000386
[exp]
185 / 2e-60 AT4G22758 139 / 2e-40 unknown protein
Lus10020544
[exp]
50 / 3e-08 AT2G27830 181 / 3e-58 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G116200
[exp]
114 / 3e-32 AT4G22758 131 / 5e-37 unknown protein
Potri.001G116200
[exp]
98 / 2e-26 AT4G22758 117 / 5e-32 unknown protein
Potri.004G188600
[exp]
41 / 4e-05 AT2G27830 160 / 5e-50 unknown protein
Potri.009G149200
[exp]
39 / 0.0002 AT2G27830 183 / 6e-59 unknown protein
Potri.003G116300
[exp]
38 / 0.0005 AT2G27830 125 / 2e-36 unknown protein
PFAM info
Representative CDS sequence
>Lus10006995 pacid=23168931 polypeptide=Lus10006995 locus=Lus10006995.g ID=Lus10006995.BGIv1.0 annot-version=v1.0
ATGGTGAAGCTTGGATCCACCGTTGAGGACACTATCAAGCTCGTGGTTAACAAGTACTCCGAAGAAGGGAGAACTCCAAAGCTTCATAGTCCCGATCATA
ATCATCATCATCCATCGTCTTCTTACGAATTGCATCAATCCCACTTCAGCCTCCGACGTTTGGAGAAGTCGGAGTTGATCGGGGAAGTAGGGAGCAGGAG
TTTCTATCTAAGGAGAAGCAGCGGTTCTCCGGACGCGATGATGGTTCCGCCGCCGGCGATGTTTCCGTTGCAGAGTTTCGTCGCGGGGAAGTTTAGTAAA
GTCGTGAGGAAGACGCGAAGGCTGTGGAATATGCTGGTCTGTTTGCCGTAA
AA sequence
>Lus10006995 pacid=23168931 polypeptide=Lus10006995 locus=Lus10006995.g ID=Lus10006995.BGIv1.0 annot-version=v1.0
MVKLGSTVEDTIKLVVNKYSEEGRTPKLHSPDHNHHHPSSSYELHQSHFSLRRLEKSELIGEVGSRSFYLRRSSGSPDAMMVPPPAMFPLQSFVAGKFSK
VVRKTRRLWNMLVCLP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G22758 unknown protein Lus10006995
[exp]
0 1
Lus10029977
[exp]
5.5 0.9312
Lus10017305
[exp]
7.7 0.9444
AT1G66240 ATX1, ATATX1 homolog of anti-oxidant 1 (.1.... Lus10034138
[exp]
8.7 0.9015
AT2G42005 Transmembrane amino acid trans... Lus10026549
[exp]
10.5 0.9326
AT1G27620 HXXXD-type acyl-transferase fa... Lus10024278
[exp]
11.8 0.8671
AT4G14740 Plant protein of unknown funct... Lus10041187
[exp]
15.5 0.9205
AT4G20090 EMB1025 embryo defective 1025, Pentatr... Lus10038398
[exp]
16.1 0.9249
AT1G08290 C2H2ZnF WIP3 WIP domain protein 3 (.1) Lus10004887
[exp]
19.4 0.9285
AT5G47635 Pollen Ole e 1 allergen and ex... Lus10038781
[exp]
21.4 0.9205
AT3G16920 ATCTL2 chitinase-like protein 2 (.1) Lus10037737
[exp]
21.9 0.9302

Lus10006995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.