Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27830 100 / 4e-27 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000385 [exp] 196 / 6e-65 AT2G27830 110 / 5e-31 unknown protein Lus10020544 [exp] 76 / 2e-17 AT2G27830 181 / 3e-58 unknown protein Lus10009391 [exp] 64 / 2e-12 AT2G27830 130 / 7e-36 unknown protein Lus10015082 [exp] 46 / 2e-06 AT2G27830 64 / 3e-13 unknown protein Lus10017628 [exp] 40 / 0.0002 AT5G37730 102 / 3e-28 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G116300 [exp] 118 / 6e-34 AT2G27830 125 / 2e-36 unknown protein Potri.004G188600 [exp] 87 / 1e-21 AT2G27830 160 / 5e-50 unknown protein Potri.009G149200 [exp] 77 / 1e-17 AT2G27830 183 / 6e-59 unknown protein Potri.003G116200 [exp] 56 / 1e-09 AT4G22758 131 / 5e-37 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006996 pacid=23168977 polypeptide=Lus10006996 locus=Lus10006996.g ID=Lus10006996.BGIv1.0 annot-version=v1.0 ATGTCATCATATCGGCAAGGCACCGGGGGAAGTAGCGGCGGCGGCGGCGGCGGAGGAGGTGGCGGAGGGAGGCTGACGAAGCTGCTGGTGAATGTGAGGA TAGAGAGGAGCTTAGGACCAGTGCAGGTGATTATGTCGCCGGAGAATCGCGTGAGGGACTTGATTAAGGCGGCGGTCGACATTTACGTGGCGGAGAAGCG GCGGCCGTTCTTGGAGGAGACTAATCCTCGCCGGTTTCAGCTCCATTACTCGCAATTCACTTTCCAGAATAATCTCCATATAATTATGGTTATTGTTTGG ATGAGCATGAGTGTAGGTTTGGATGAAGAAGAGAAGTTGGCAAACTTAGAATCGAGGAATTTCTTCATGTGTTCATCGGAGAGGTCGTCGCCGACTTATA GTAGCACGTCATCTTCGACAACACTCTATTCGTTGCATGGATCTGAAGTGAAAACGGTCTCGTTCCAGTCTTCCGATTTACAATCCGCAAAGTGGACGGA GTTCTTGCTCTAG
AA sequence Show only first row Show all	>Lus10006996 pacid=23168977 polypeptide=Lus10006996 locus=Lus10006996.g ID=Lus10006996.BGIv1.0 annot-version=v1.0 MSSYRQGTGGSSGGGGGGGGGGGRLTKLLVNVRIERSLGPVQVIMSPENRVRDLIKAAVDIYVAEKRRPFLEETNPRRFQLHYSQFTFQNNLHIIMVIVW MSMSVGLDEEEKLANLESRNFFMCSSERSSPTYSSTSSSTTLYSLHGSEVKTVSFQSSDLQSAKWTEFLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27830			unknown protein		Lus10006996 [exp]	0	1
AT2G27830			unknown protein		Lus10000385 [exp]	1.0	0.9441
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040787 [exp]	15.9	0.7709
AT3G46600	GRAS		GRAS family transcription fact...		Lus10040789 [exp]	19.8	0.7766
AT1G54730			Major facilitator superfamily ...		Lus10035354 [exp]	32.9	0.7826
AT3G11210			SGNH hydrolase-type esterase s...		Lus10004815 [exp]	42.7	0.7561
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10030312 [exp]	48.2	0.7698
AT2G30330		BLOS1	BLOC subunit 1, GCN5L1 family ...		Lus10030147 [exp]	48.3	0.7506
AT3G26922			F-box/RNI-like superfamily pro...		Lus10016192 [exp]	50.7	0.6877
					Lus10007298 [exp]	53.0	0.7719
AT5G53120		SPMS, SPDS3, AT...	spermidine synthase 3 (.1.2.3....		Lus10019016 [exp]	56.1	0.7672

Compare expression of checked genes

Lus10006996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.