Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12390 149 / 1e-46 Cornichon family protein (.1) AT1G12340 146 / 7e-46 Cornichon family protein (.1) AT1G62880 142 / 4e-44 Cornichon family protein (.1.2) AT4G12090 125 / 2e-37 Cornichon family protein (.1) AT3G12180 100 / 1e-27 Cornichon family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007000 [exp] 288 / 4e-101 AT1G12390 176 / 3e-57 Cornichon family protein (.1) Lus10028906 [exp] 192 / 1e-63 AT1G12390 207 / 2e-70 Cornichon family protein (.1) Lus10004320 [exp] 192 / 2e-62 AT1G12390 173 / 1e-55 Cornichon family protein (.1) Lus10000384 [exp] 174 / 2e-56 AT1G12390 161 / 5e-52 Cornichon family protein (.1) Lus10009295 [exp] 114 / 5e-33 AT1G12390 142 / 7e-45 Cornichon family protein (.1) Lus10015866 [exp] 113 / 7e-33 AT1G12390 128 / 1e-39 Cornichon family protein (.1) Lus10030270 [exp] 91 / 3e-24 AT1G12390 94 / 2e-26 Cornichon family protein (.1) Lus10004023 [exp] 83 / 8e-21 AT1G12340 101 / 5e-30 Cornichon family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G116400 [exp] 174 / 8e-57 AT1G12390 182 / 2e-60 Cornichon family protein (.1) Potri.001G116100 [exp] 174 / 2e-56 AT1G12390 184 / 3e-61 Cornichon family protein (.1) Potri.002G148500 [exp] 88 / 5e-23 AT1G12390 106 / 9e-31 Cornichon family protein (.1) Potri.016G051000 [exp] 86 / 2e-21 AT3G12180 142 / 4e-44 Cornichon family protein (.1) Potri.006G057300 [exp] 85 / 2e-21 AT3G12180 109 / 3e-31 Cornichon family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03311 [flax] [poplar] Cornichon Cornichon protein
Representative CDS sequence Show only first row Show all	>Lus10006997 pacid=23168947 polypeptide=Lus10006997 locus=Lus10006997.g ID=Lus10006997.BGIv1.0 annot-version=v1.0 ATGGGAGATCTATACGTATGGCTAATCTCCTTCTTCTTCGTTATCGCCCTAATCTTCATCGTCATCTTCCAGGACTTGTTTGGAGGTTGGGGTTTTCTGC AGCTGCTCATGATACTGGAATGTGAGATTTTTGACACACTGTGGAACTTGTGTTTTGGACAGCTTATGTGCTTGGCCGATTTGGAGTCTGATTACATCAA CCCTTATGACTCTTCATCAAGGATCAACAAAGCGATTTTGCCAGAGTATATCACTGAAGCAGCTTTGTGCTTCTTTTTCCTTGTGACTGGCCATTGGTGT ATGGCTCTTGTGTGTGCTCCTTACCTTTACTACAATGTCCGCCTTTACATGCGAAGACAGCATCTGATAGACGTTACCGAGGTTTTCAACTTGTTACGCG GTGAAATGAACCAACGAATATATAAGTTGGTTTATCTCGTCCTCCTCCTTTTCCTAGCTATATTCTGGATGATTATGACGGCCTTGGAAGATCACGACAT GGATTGA
AA sequence Show only first row Show all	>Lus10006997 pacid=23168947 polypeptide=Lus10006997 locus=Lus10006997.g ID=Lus10006997.BGIv1.0 annot-version=v1.0 MGDLYVWLISFFFVIALIFIVIFQDLFGGWGFLQLLMILECEIFDTLWNLCFGQLMCLADLESDYINPYDSSSRINKAILPEYITEAALCFFFLVTGHWC MALVCAPYLYYNVRLYMRRQHLIDVTEVFNLLRGEMNQRIYKLVYLVLLLFLAIFWMIMTALEDHDMD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12390			Cornichon family protein (.1)		Lus10006997 [exp]	0	1
AT1G04530		TPR4	tetratricopeptide repeat 4, Te...		Lus10014468 [exp]	1.0	0.8786
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Lus10034259 [exp]	5.0	0.8636
AT2G16860			GCIP-interacting family protei...		Lus10039220 [exp]	8.8	0.8774
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030906 [exp]	9.8	0.8641
AT3G11290			unknown protein		Lus10002039 [exp]	11.6	0.8690
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10032065 [exp]	13.3	0.8581
AT3G13970		APG12B, APG12	AUTOPHAGY 12 B, AUTOPHAGY 12, ...		Lus10000432 [exp]	15.5	0.8615
AT5G03430			phosphoadenosine phosphosulfat...		Lus10026539 [exp]	18.2	0.8422
AT3G50360		CEN1, ATCEN2	CENTRIN 1, centrin2 (.1)		Lus10009353 [exp]	19.4	0.8258
AT1G05410			Protein of unknown function (D...		Lus10004900 [exp]	22.6	0.8611

Compare expression of checked genes

Lus10006997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.