Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12390 149 / 1e-46 Cornichon family protein (.1) AT1G12340 146 / 7e-46 Cornichon family protein (.1) AT1G62880 142 / 4e-44 Cornichon family protein (.1.2) AT4G12090 125 / 2e-37 Cornichon family protein (.1) AT3G12180 100 / 1e-27 Cornichon family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006997 [exp] 288 / 4e-101 AT1G12390 176 / 3e-57 Cornichon family protein (.1) Lus10028906 [exp] 192 / 1e-63 AT1G12390 207 / 2e-70 Cornichon family protein (.1) Lus10004320 [exp] 192 / 2e-62 AT1G12390 173 / 1e-55 Cornichon family protein (.1) Lus10000384 [exp] 174 / 2e-56 AT1G12390 161 / 5e-52 Cornichon family protein (.1) Lus10009295 [exp] 114 / 5e-33 AT1G12390 142 / 7e-45 Cornichon family protein (.1) Lus10015866 [exp] 113 / 7e-33 AT1G12390 128 / 1e-39 Cornichon family protein (.1) Lus10030270 [exp] 91 / 3e-24 AT1G12390 94 / 2e-26 Cornichon family protein (.1) Lus10004023 [exp] 83 / 8e-21 AT1G12340 101 / 5e-30 Cornichon family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G116400 [exp] 174 / 8e-57 AT1G12390 182 / 2e-60 Cornichon family protein (.1) Potri.001G116100 [exp] 174 / 2e-56 AT1G12390 184 / 3e-61 Cornichon family protein (.1) Potri.002G148500 [exp] 88 / 5e-23 AT1G12390 106 / 9e-31 Cornichon family protein (.1) Potri.016G051000 [exp] 86 / 2e-21 AT3G12180 142 / 4e-44 Cornichon family protein (.1) Potri.006G057300 [exp] 85 / 2e-21 AT3G12180 109 / 3e-31 Cornichon family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03311 [flax] [poplar] Cornichon Cornichon protein
Representative CDS sequence Show only first row Show all	>Lus10007000 pacid=23168948 polypeptide=Lus10007000 locus=Lus10007000.g ID=Lus10007000.BGIv1.0 annot-version=v1.0 ATGGGAGATCTATACGTATGGCTAATCTCCTTCTTCTTCGTTATCGCCCTAATCTTCATCGTCATCTTCCAGGACTTGTTTGGAGGTTGGGGTTTTCTGC AGCTGCTCATGATACTGGAATGTGAGATTTTTGACACACTGTGGAACTTGTGTTTTGGACAGCTTATGTGCTTGGCCGATTTGGAGTCTGATTACATCAA CCCTTATGACTCTTCATCAAGGATCAACAAAGCGATTTTGCCAGAGTATATCACTGAAGCAGCTTTGTGCTTCTTTTTCCTTGTGACTGGCCATTGGTGT ATGGCTCTTGTGTGTGCTCCTTACCTTTACTACAATGTCCGCCTTTACATGCGAAGACAGCATCTGATAGACGTTACCGAGGTTTTCAACTTGTTACGCG GTGAAATGAACCAACGAATATATAAGTTGGTTTATCTCGTCCTCCTCCTTTTCCTAGCTATATTCTGGATGATTATGACGGCCTTGGAAGATCACGACAT GGATTGA
AA sequence Show only first row Show all	>Lus10007000 pacid=23168948 polypeptide=Lus10007000 locus=Lus10007000.g ID=Lus10007000.BGIv1.0 annot-version=v1.0 MGDLYVWLISFFFVIALIFIVIFQDLFGGWGFLQLLMILECEIFDTLWNLCFGQLMCLADLESDYINPYDSSSRINKAILPEYITEAALCFFFLVTGHWC MALVCAPYLYYNVRLYMRRQHLIDVTEVFNLLRGEMNQRIYKLVYLVLLLFLAIFWMIMTALEDHDMD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12390			Cornichon family protein (.1)		Lus10007000 [exp]	0	1
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Lus10034259 [exp]	3.5	0.8576
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030906 [exp]	5.4	0.8584
AT3G61113			Ubiquitin related modifier 1 (...		Lus10036551 [exp]	14.8	0.8236
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10005077 [exp]	20.6	0.8137
AT3G19460			Reticulon family protein (.1.2...		Lus10019812 [exp]	21.2	0.8159
AT1G22140			unknown protein		Lus10025627 [exp]	22.1	0.8130
AT3G50360		CEN1, ATCEN2	CENTRIN 1, centrin2 (.1)		Lus10009353 [exp]	23.2	0.7921
AT3G13970		APG12B, APG12	AUTOPHAGY 12 B, AUTOPHAGY 12, ...		Lus10000432 [exp]	24.3	0.8169
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	26.2	0.7870
AT5G04910			unknown protein		Lus10008941 [exp]	27.4	0.8002

Compare expression of checked genes

Lus10007000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.