Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54210 244 / 2e-82 Ribosomal protein L17 family protein (.1) AT5G09770 108 / 6e-30 Ribosomal protein L17 family protein (.1) AT5G64650 107 / 3e-29 Ribosomal protein L17 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006999 [exp] 421 / 5e-151 AT3G54210 248 / 1e-82 Ribosomal protein L17 family protein (.1) Lus10000382 [exp] 410 / 1e-147 AT3G54210 245 / 3e-82 Ribosomal protein L17 family protein (.1) Lus10035729 [exp] 117 / 4e-33 AT5G09770 271 / 6e-95 Ribosomal protein L17 family protein (.1) Lus10037314 [exp] 114 / 4e-32 AT5G09770 274 / 6e-96 Ribosomal protein L17 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G113500 [exp] 267 / 2e-91 AT3G54210 253 / 1e-85 Ribosomal protein L17 family protein (.1) Potri.016G143100 [exp] 244 / 3e-82 AT3G54210 258 / 7e-88 Ribosomal protein L17 family protein (.1) Potri.007G107100 [exp] 112 / 4e-31 AT5G64650 258 / 1e-89 Ribosomal protein L17 family protein (.1) Potri.005G061700 [exp] 107 / 1e-29 AT5G64650 257 / 4e-89 Ribosomal protein L17 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01196 [flax] [poplar] Ribosomal_L17 Ribosomal protein L17
Representative CDS sequence Show only first row Show all	>Lus10007002 pacid=23168963 polypeptide=Lus10007002 locus=Lus10007002.g ID=Lus10007002.BGIv1.0 annot-version=v1.0 ATGCTGGCGACGGCCGGAGTTTGTGACACCAGATGGAGCATGGTTTCCTTACGGTCAGCGCTCCCTGTTCTTCCTTATTCGCCTCCGACGGCCGTCAATC TTCGACTCCAATCCTCCCGCACTAAAGCTATCTCCGTCAGTCGTTTACAAACTCACTCTTTCCGCTCCTTAGCTGGAATTCCTCTTCTAGATCCTCTGCA TTCTTCACTTCGCTTCACCGAGCCTGCCGAGAGCCATCGGTTCCCTTCCTCGGTGGACAATGGATCGCGGTTCTTCGCCATGAGACACGGCAGGAAAGTT GCCAGGCTGAACCGGCCACCGGACCAGCGAAAGGCCCTCCTGAGAGCGCTAACTACGCAACTACTAAAGCACGGCCGGATCAAGACCACCAGAGCTCGTG CTAGCGGCATGAGGAAGTTTGTGGACAAGATGATCACTCTAGCCAAGGACGGGTCGCTTCATAAGAGGAGACAGGCTCTGGGATTCATATACGAGAAGCA GATCGTGCACGCCTTGTTCGCAGAGGTTCAGGAGAGATACGGGGAGAGGAACGGTGGGTACACGAGGATCATCAGGACTTTGCCGAGGCGTGGAGACAAT GCTCCCATGGCGTACATTGAACTTGTATGA
AA sequence Show only first row Show all	>Lus10007002 pacid=23168963 polypeptide=Lus10007002 locus=Lus10007002.g ID=Lus10007002.BGIv1.0 annot-version=v1.0 MLATAGVCDTRWSMVSLRSALPVLPYSPPTAVNLRLQSSRTKAISVSRLQTHSFRSLAGIPLLDPLHSSLRFTEPAESHRFPSSVDNGSRFFAMRHGRKV ARLNRPPDQRKALLRALTTQLLKHGRIKTTRARASGMRKFVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRRGDN APMAYIELV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54210			Ribosomal protein L17 family p...		Lus10007002 [exp]	0	1
AT3G54210			Ribosomal protein L17 family p...		Lus10006999 [exp]	1.0	0.9879
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10021693 [exp]	2.0	0.9735
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10040147 [exp]	3.2	0.9604
AT5G06290		2CPB, 2-CysPrxB...	2-CYS PEROXIREDOXIN B, 2-cyste...		Lus10016969 [exp]	3.5	0.9633
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Lus10016295 [exp]	3.7	0.9406
AT2G35410			RNA-binding (RRM/RBD/RNP motif...		Lus10037265 [exp]	4.0	0.9514
AT3G08740			elongation factor P (EF-P) fam...		Lus10022740 [exp]	4.2	0.9562
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10039810 [exp]	4.2	0.9638
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10018579 [exp]	7.9	0.9520
AT3G19810			Protein of unknown function (D...		Lus10010214 [exp]	9.5	0.9422

Compare expression of checked genes

Lus10007002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.