Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12080 134 / 8e-37 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT5G51590 115 / 2e-29 AT-hook AT hook motif DNA-binding family protein (.1) AT4G22770 110 / 3e-28 AT-hook AT hook motif DNA-binding family protein (.1) AT4G00200 110 / 3e-28 AT-hook AT hook motif DNA-binding family protein (.1) AT4G25320 105 / 6e-26 AT-hook AT hook motif DNA-binding family protein (.1) AT5G62260 102 / 6e-25 AT-hook AT hook motif DNA-binding family protein (.1) AT2G33620 100 / 4e-24 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT4G17950 89 / 5e-20 AT-hook AT hook motif DNA-binding family protein (.1) AT3G61310 88 / 9e-20 AT-hook AT hook motif DNA-binding family protein (.1) AT1G63470 88 / 9e-20 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000381 [exp] 301 / 1e-102 AT4G12080 184 / 5e-56 AT-hook motif nuclear-localized protein 1 (.1) Lus10004318 [exp] 166 / 3e-49 AT4G12080 305 / 3e-102 AT-hook motif nuclear-localized protein 1 (.1) Lus10030269 [exp] 119 / 3e-31 AT4G12080 294 / 7e-98 AT-hook motif nuclear-localized protein 1 (.1) Lus10004022 [exp] 119 / 4e-31 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1) Lus10031696 [exp] 114 / 5e-29 AT4G25320 260 / 1e-83 AT hook motif DNA-binding family protein (.1) Lus10038903 [exp] 108 / 2e-27 AT4G25320 257 / 4e-83 AT hook motif DNA-binding family protein (.1) Lus10031118 [exp] 104 / 1e-26 AT4G25320 231 / 2e-74 AT hook motif DNA-binding family protein (.1) Lus10015027 [exp] 105 / 3e-26 AT4G25320 267 / 5e-87 AT hook motif DNA-binding family protein (.1) Lus10030381 [exp] 103 / 3e-25 AT2G45850 284 / 3e-94 AT hook motif DNA-binding family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G115800 [exp] 163 / 2e-48 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.003G116500 [exp] 160 / 5e-47 AT4G12080 251 / 2e-81 AT-hook motif nuclear-localized protein 1 (.1) Potri.002G148600 [exp] 133 / 8e-37 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.014G070000 [exp] 131 / 4e-36 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.012G129500 [exp] 119 / 4e-31 AT5G62260 202 / 2e-61 AT hook motif DNA-binding family protein (.1) Potri.002G158200 [exp] 108 / 2e-27 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.014G082100 [exp] 108 / 3e-27 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2) Potri.002G005000 [exp] 103 / 2e-25 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.005G256500 [exp] 101 / 2e-24 AT2G33620 196 / 2e-59 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.001G143500 [exp] 99 / 2e-23 AT4G17950 243 / 9e-77 AT hook motif DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10007003 pacid=23168928 polypeptide=Lus10007003 locus=Lus10007003.g ID=Lus10007003.BGIv1.0 annot-version=v1.0 ATGACCCAGGGGGTTCTGGCAAAGAAAAAGCGAGGGAGGCCGAGGAAGAACAACCCAGATGGGAGTCTTGCGACCCCGGCTCGCTCCGCGAAGCCGATTT CCACCTCTGCGTCGTCGGCGCCGCTGCCGGTGATTGATTTCTCGTCCGCGAAGCGGCCGAGACTGAAGCCGGTGAGCAAGAAGGATGAGCCTGAGGAAGA GTTAACTTATGGTGAGCTCGCTGACGAATTTGTGCCGGTGAATAAGTGGGTTACTCGCTCCGTCAGCAACAGTTTCACTGCTCATGTGCTTAGGGTTGAT TCCGGACAGGATATTCTGATGCATATCATGGGATTTGTTCACCAAGGTCCTCGAGCTATATGCGTGCTCTCTGCAAATGGTTTTGTCTCGACTGTTACCC TTCGTCTTAATACTGCCGGGACTACTATAACTTATGAGGGATGGTTCGAGTTAATCTCGTTGACCGGGTCTTTTGTGCCTACCAAAAACGGGGCGACAGG GAAGAGAACAGGTGGGATGAGCGTGTCGTTTGCCGATTCAAAGGGGATTGTAGCTGGTGGTGGCGTTGCTGGCAAAGTAGTAGCTGCTGCTCCGGTGCAG GTCGTGGTAGCCAGTTTTCTGCCCGGGGACCGGTACTTTCAGGAGCCGAAGAAGGAGCAGAACCACGACGACTCCTTCACTGCAACAACCCCTCCTGGAT TTGCAGCAACCCCACCCGTATTTGTGACCCCCATATCCGTTGCTGACCCGAATGCCGGAACTTCATCCCAGTTTCAATGGGGCAATCGGTATAGCAATCC GAAAAATTCGAGGAGTAAGCAAGCCAAGATTGACGCTATTGATGATTGA
AA sequence Show only first row Show all	>Lus10007003 pacid=23168928 polypeptide=Lus10007003 locus=Lus10007003.g ID=Lus10007003.BGIv1.0 annot-version=v1.0 MTQGVLAKKKRGRPRKNNPDGSLATPARSAKPISTSASSAPLPVIDFSSAKRPRLKPVSKKDEPEEELTYGELADEFVPVNKWVTRSVSNSFTAHVLRVD SGQDILMHIMGFVHQGPRAICVLSANGFVSTVTLRLNTAGTTITYEGWFELISLTGSFVPTKNGATGKRTGGMSVSFADSKGIVAGGGVAGKVVAAAPVQ VVVASFLPGDRYFQEPKKEQNHDDSFTATTPPGFAATPPVFVTPISVADPNAGTSSQFQWGNRYSNPKNSRSKQAKIDAIDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10007003 [exp]	0	1
AT1G52490			unknown protein		Lus10022937 [exp]	5.4	0.6671
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10000177 [exp]	15.0	0.6080
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10005650 [exp]	23.0	0.6590
AT4G17260			Lactate/malate dehydrogenase f...		Lus10006030 [exp]	29.8	0.6128
AT1G60410			F-box family protein (.1)		Lus10020292 [exp]	32.6	0.6105
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10012414 [exp]	34.2	0.6230
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10005740 [exp]	34.4	0.6608
					Lus10013650 [exp]	84.7	0.5936
					Lus10013649 [exp]	93.5	0.5783
AT1G52490			unknown protein		Lus10022939 [exp]	96.5	0.6050

Compare expression of checked genes

Lus10007003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.