Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12420 289 / 1e-92 ACR8 ACT domain repeat 8 (.1) AT4G22780 275 / 2e-87 ACR7 ACT domain repeat 7 (.1) AT1G69040 207 / 2e-61 ACR4 ACT domain repeat 4 (.1.2) AT2G03730 195 / 1e-56 ACR5 ACT domain repeat 5 (.1.2) AT3G01990 184 / 8e-53 ACR6 ACT domain repeat 6 (.1) AT1G76990 175 / 3e-49 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT5G25320 169 / 2e-46 ACT-like superfamily protein (.1) AT5G65890 165 / 2e-45 ACR1 ACT domain repeat 1 (.1.2) AT2G39570 52 / 8e-07 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006662 [exp] 258 / 4e-81 AT4G22780 483 / 4e-170 ACT domain repeat 7 (.1) Lus10012550 [exp] 208 / 1e-61 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10041543 [exp] 207 / 2e-61 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10003136 [exp] 205 / 2e-60 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10036827 [exp] 199 / 2e-58 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10011329 [exp] 199 / 3e-58 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10028646 [exp] 179 / 1e-50 AT1G76990 699 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10018943 [exp] 179 / 2e-49 AT1G76990 686 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10011715 [exp] 169 / 7e-47 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G116600 [exp] 342 / 2e-113 AT1G12420 624 / 0.0 ACT domain repeat 8 (.1) Potri.001G115600 [exp] 332 / 1e-109 AT1G12420 627 / 0.0 ACT domain repeat 8 (.1) Potri.010G138600 [exp] 211 / 8e-63 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2) Potri.T124144 [exp] 208 / 8e-62 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2) Potri.008G109200 [exp] 208 / 2e-61 AT1G69040 723 / 0.0 ACT domain repeat 4 (.1.2) Potri.001G060100 [exp] 201 / 3e-59 AT1G69040 505 / 7e-178 ACT domain repeat 4 (.1.2) Potri.001G327000 [exp] 201 / 5e-59 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1) Potri.003G167800 [exp] 198 / 8e-58 AT1G69040 486 / 1e-170 ACT domain repeat 4 (.1.2) Potri.012G083000 [exp] 195 / 7e-57 AT1G69040 493 / 3e-173 ACT domain repeat 4 (.1.2) Potri.015G100300 [exp] 195 / 8e-57 AT1G69040 483 / 3e-169 ACT domain repeat 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Lus10007004 pacid=23168939 polypeptide=Lus10007004 locus=Lus10007004.g ID=Lus10007004.BGIv1.0 annot-version=v1.0 ATGGAGTGGAGTGCTTGTCTAGATGAGTATGAGAAGCTCGTCATCCGTATGAACACTCCCAGAGTGGTCATAGATAATGCCGTTTGCCCTACGACCACAG TCGTCAAAGTTGACAGCGGGAGAAAACACGGCATTTTGCTTGAAGCGGTTCAGGTTCTCACAGATCTGAACCTCTCCATTAAAAAAGCTTACATTTCCTC CGACGGAAGATGGTTCATGGACGTTTTCCATGTGACCGATCTGAACGGGAAGAAGCTAACCGACGAGAGCGTGATCAACTACATTGAACAGAGTTTGGGG ACGGTTGATTATGGTCGGACCAACGATTTCACCGGCTTGACCGCTCTCGAACTGACCGGAACCGACAGGGTGGGACTTCTGTCGGAGGTGTTTGCTGTCC TGTCTGATCTGCAATGCAGCGTAGCGGACGCAAAAGTGTGGACTCACAACGGGAGGGCCGCGTCCTTGATCCACGTCAAAGACTGCCACTCGGGGTCACC GATCGAGGACTCGAAGCAGATCGAGCGAATCGAGGCCCGGTTGAGGAATGTGCTCAAGGGGGATAATGATGATGTGAGNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATTTGGTTTAG
AA sequence Show only first row Show all	>Lus10007004 pacid=23168939 polypeptide=Lus10007004 locus=Lus10007004.g ID=Lus10007004.BGIv1.0 annot-version=v1.0 MEWSACLDEYEKLVIRMNTPRVVIDNAVCPTTTVVKVDSGRKHGILLEAVQVLTDLNLSIKKAYISSDGRWFMDVFHVTDLNGKKLTDESVINYIEQSLG TVDYGRTNDFTGLTALELTGTDRVGLLSEVFAVLSDLQCSVADAKVWTHNGRAASLIHVKDCHSGSPIEDSKQIERIEARLRNVLKGDNDDVXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12420		ACR8	ACT domain repeat 8 (.1)		Lus10007004 [exp]	0	1
AT3G54000			unknown protein		Lus10017206 [exp]	1.0	0.8674
AT4G32840		PFK6	phosphofructokinase 6 (.1)		Lus10005488 [exp]	2.8	0.8098
AT5G42200			RING/U-box superfamily protein...		Lus10017253 [exp]	3.2	0.8025
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10029266 [exp]	7.1	0.8073
AT2G47650		UXS4	UDP-xylose synthase 4 (.1.2)		Lus10008216 [exp]	9.8	0.7950
AT3G12110		ACT11	actin-11 (.1)		Lus10016558 [exp]	11.0	0.8419
AT1G72790			hydroxyproline-rich glycoprote...		Lus10006024 [exp]	15.0	0.8391
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10031944 [exp]	22.4	0.7986
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10018954 [exp]	23.6	0.8055
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10005649 [exp]	25.7	0.7763

Compare expression of checked genes

Lus10007004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.