Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12060 181 / 5e-57 Double Clp-N motif protein (.1) AT4G25370 162 / 1e-49 Double Clp-N motif protein (.1) AT5G50920 61 / 1e-10 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 58 / 1e-09 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT3G45450 44 / 3e-05 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006663 [exp] 408 / 1e-146 AT4G12060 179 / 5e-56 Double Clp-N motif protein (.1) Lus10031694 [exp] 145 / 5e-43 AT4G12060 186 / 3e-59 Double Clp-N motif protein (.1) Lus10031116 [exp] 142 / 3e-42 AT4G12060 176 / 4e-55 Double Clp-N motif protein (.1) Lus10036017 [exp] 62 / 5e-11 AT5G50920 1542 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10016723 [exp] 62 / 6e-11 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10032543 [exp] 59 / 1e-10 AT5G50920 265 / 9e-83 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10043198 [exp] 59 / 2e-10 AT5G50920 266 / 3e-83 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G115500 [exp] 223 / 2e-73 AT4G12060 226 / 2e-74 Double Clp-N motif protein (.1) Potri.015G131700 [exp] 170 / 8e-53 AT4G25370 243 / 1e-81 Double Clp-N motif protein (.1) Potri.012G129800 [exp] 167 / 5e-52 AT4G25370 248 / 2e-83 Double Clp-N motif protein (.1) Potri.015G105100 [exp] 59 / 6e-10 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.012G105900 [exp] 59 / 6e-10 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02861 [flax] [poplar] Clp_N Clp amino terminal domain, pathogenicity island component
Representative CDS sequence Show only first row Show all	>Lus10007005 pacid=23168973 polypeptide=Lus10007005 locus=Lus10007005.g ID=Lus10007005.BGIv1.0 annot-version=v1.0 ATGGCAGCAGCAGCTCAATCTCTATCTACAAATCTTCAGACAATCCACAAACCCAATCTCAAAACACCAAAACTTCAATCTCCACAATCCCTGAAACCCT TCACCCTGCAAAACCCTTCATTTTCACGCATAACCTTCCGCCGCCGCTCTCTTCTCCAACCCATTCCCGCCACCGCGCTTCCAACTGCGAATCCGGAGAG GCTTGCATCGGCTGAGAAAGTTCCCCAGTGGTCGGTGATGGCGATAAAGGCGTTTGCAAAGGCTTCATTGCAGGCTAGGAAGCTCAAGCATCCTGAAACT GGGACTGATTCTCTTCTATTGGGTGTCTTGATTGAAGGTACCGGTGCTGCTGCGAAGTATCTGTGGGAGAATGGTATAACAGTGTTCAGGACACGGGACG TGATCAGTAAGTTACTCGGAGATGCTGATGTTTTCACTGCTGTCCCCGGAGAGTCTCCTCCCTTGACTGAAGATGCTCAAAGGGCAATTGATTTGGCTGT TGACCGTAAAATGAAATCCGGTGCTGGTGGCGAAGTAACAACGATCGATATGATTCTTGGCATTTGGTCAGATGCTGATTCACCGGGCCACAAAGTCTTG GCCGCGATGGGTTTCAACAACGAAAAAGCAAAAGAGCTGCAATCTAAAAATTCTGGACCTGGGATGGTGGAGGCATGA
AA sequence Show only first row Show all	>Lus10007005 pacid=23168973 polypeptide=Lus10007005 locus=Lus10007005.g ID=Lus10007005.BGIv1.0 annot-version=v1.0 MAAAAQSLSTNLQTIHKPNLKTPKLQSPQSLKPFTLQNPSFSRITFRRRSLLQPIPATALPTANPERLASAEKVPQWSVMAIKAFAKASLQARKLKHPET GTDSLLLGVLIEGTGAAAKYLWENGITVFRTRDVISKLLGDADVFTAVPGESPPLTEDAQRAIDLAVDRKMKSGAGGEVTTIDMILGIWSDADSPGHKVL AAMGFNNEKAKELQSKNSGPGMVEA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12060			Double Clp-N motif protein (.1...		Lus10007005 [exp]	0	1
AT5G10910			mraW methylase family protein ...		Lus10042729 [exp]	1.0	0.8819
AT1G63270		ABCI1, ATNAP10	ATP-binding cassette I1, non-i...		Lus10022692 [exp]	12.5	0.8514
AT3G02080			Ribosomal protein S19e family ...		Lus10021865 [exp]	13.5	0.8653
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10010496 [exp]	18.7	0.8499
AT3G09630			Ribosomal protein L4/L1 family...		Lus10014431 [exp]	20.8	0.8734
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10014787 [exp]	23.4	0.8231
AT1G31860		HISN2, AT-IE	HISTIDINE BIOSYNTHESIS 2, hist...		Lus10034105 [exp]	26.8	0.8224
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10014080 [exp]	27.0	0.8384
AT4G36790			Major facilitator superfamily ...		Lus10041712 [exp]	32.1	0.7678
					Lus10032893 [exp]	33.2	0.7797

Compare expression of checked genes

Lus10007005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.