Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22790 448 / 5e-154 MATE efflux family protein (.1) AT4G29140 228 / 5e-68 ADS1 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) AT1G71870 225 / 3e-67 MATE efflux family protein (.1) AT5G19700 222 / 4e-66 MATE efflux family protein (.1) AT1G58340 198 / 5e-57 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) AT4G23030 197 / 6e-57 MATE efflux family protein (.1) AT5G52050 192 / 7e-55 MATE efflux family protein (.1) AT2G38510 190 / 2e-54 MATE efflux family protein (.1) AT5G49130 177 / 3e-49 MATE efflux family protein (.1) AT2G04040 143 / 2e-37 ATDTX1 detoxification 1, MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017836 [exp] 233 / 2e-70 AT4G23030 608 / 0.0 MATE efflux family protein (.1) Lus10027417 [exp] 228 / 8e-68 AT4G23030 601 / 0.0 MATE efflux family protein (.1) Lus10007231 [exp] 208 / 2e-60 AT1G58340 649 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10012944 [exp] 192 / 9e-55 AT4G29140 639 / 0.0 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) Lus10009788 [exp] 176 / 4e-49 AT5G49130 627 / 0.0 MATE efflux family protein (.1) Lus10028230 [exp] 174 / 4e-48 AT1G58340 567 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10038987 [exp] 172 / 1e-47 AT1G71870 527 / 0.0 MATE efflux family protein (.1) Lus10025237 [exp] 161 / 5e-43 AT2G38510 640 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 156 / 5e-42 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G116700 [exp] 558 / 0 AT4G22790 441 / 2e-151 MATE efflux family protein (.1) Potri.001G115400 [exp] 553 / 0 AT4G22790 487 / 3e-169 MATE efflux family protein (.1) Potri.003G121400 [exp] 229 / 7e-69 AT4G23030 635 / 0.0 MATE efflux family protein (.1) Potri.007G043100 [exp] 224 / 9e-67 AT1G58340 475 / 8e-164 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.013G115600 [exp] 223 / 2e-66 AT1G71870 637 / 0.0 MATE efflux family protein (.1) Potri.019G086100 [exp] 222 / 2e-66 AT1G71870 654 / 0.0 MATE efflux family protein (.1) Potri.015G135600 [exp] 219 / 9e-65 AT4G23030 576 / 0.0 MATE efflux family protein (.1) Potri.012G133500 [exp] 214 / 7e-63 AT4G23030 578 / 0.0 MATE efflux family protein (.1) Potri.002G107200 [exp] 199 / 2e-57 AT1G58340 600 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.016G134800 [exp] 187 / 5e-53 AT2G38510 597 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10007006 pacid=23168937 polypeptide=Lus10007006 locus=Lus10007006.g ID=Lus10007006.BGIv1.0 annot-version=v1.0 ATGATGATTTCTCCTTCAAAATCTGAAGAGGACCAACTTCCCAAATCCTCTCCAACTCCAACACCCAAATCAACAAGATGGCTAAAGGACCTTATAACCA GTGTGATTTGGGAGCTGAAAACCCAGAAAGGAATAATCCTTCCTTTGCTAGCCATGAACTTGACATGGTTTGGCAAGACAGCCATCACAACAGCATTTCT AGGCAGGCTCGGATCGCTGGAGCTAGCCGGTGGGGCCCTCGGGTTAACGTTCGCCAACGTTACCGGATTCTCCGTCTTGAATGGTCTCTGTGCAGCCATG GAACCCATCTGTGGCCAGGCTAATGGAGCCAAGAACTACAGGCTTTTGCAGAAGACATTGGTCATGGCTGTTCTGATGTTGCTGGTTGTCACAGTTCCTG TGGCTTTCTTGTGGCTCAATGTTGACAAAATCCTGATATGTTTCGGACAAGAGGAAGACATCTCACTTGTTGCTAAGAAGTATCTGTTCTATCTCCTTCC TGACCTTTTGATCACTTGCTTCCTCTCCCCTCTTAAATCCTACTTGACCTCTCAATGCGTAACGGTCCCCATCATGCTTAGTTCGGCTCTAGGCCTGGCG TTCCATGTCCCGGTAAACATCTTGATGTCAAAAACCAAAGGATTGGAAGGTGTGTCTATGGCAACTTGGATGACTGATCTCTTGATAGTCATCCTTCTTG GTGTGTATGTGTTCGTGAGTGAAAGCAAGAAGGGGAGGAATTGGAAAGAAGGCGGATGGCTCGAACAGGATTCCCGAGACTGGATCAAGCTACTCAAACT GAGCGGACCGTGTTGCCTAAGCACTTGCCTCGAATGGTGGTGTTGGGAGATATTGCTCTTGCTCACTGGCCACCTCGCTAATGCGAAGCAGGCAGTGAGT GTCTTGGCCATCGTCATGAACTTTGACTACTTGTTGTTCTCCGTGATGCAGTCACTGGCTACCTGTGTCTCCTGTCGAGTCTCGAACGAGCTTGGATCCA ACCATCCGGACAATGCTTCGCGATCTTCTTTAGTATCAATGGCTTCAGGAGTGGCTCTGGGACTCGTTGGTAGCTCGGTGATGGTGGCAGTCGGTGGAAA GTGGGGGGCTTTGTTTAGTAAGGATGAAGGGGTCAGGAAAGGTGTGAAGAAGATGATGTTGCTAATGGCTGTTTTGGAAGTTGTGAATTTCCCTATGGTT GCTTGTGGTGGGATTGTTAGAGGAACAGCTAGGCCATGGTTGGCTATGTATGCAAATGTTGGTGGGTTTTACCTGGTGGCTTTGCCTCTATGTGTAGCTT TGGCATTCAAAGTCGGCCTCGGACTTAGCGGACTGCTGATAGGATTCTTGGTAGGGCTTACTGCTTGCTTGGCTTTGTTGGTGTTCTTCATTGCCAGACT TGATTGGAAAGTTGAAGCCTTTAAGGCACAGAAGCTCGCCTGTTGCCTATCGCCCGATCCCATCGAAGAAGGCGAAAGTTCCCAAATGACAGAGCAAACA GTTCATGTATGA
AA sequence Show only first row Show all	>Lus10007006 pacid=23168937 polypeptide=Lus10007006 locus=Lus10007006.g ID=Lus10007006.BGIv1.0 annot-version=v1.0 MMISPSKSEEDQLPKSSPTPTPKSTRWLKDLITSVIWELKTQKGIILPLLAMNLTWFGKTAITTAFLGRLGSLELAGGALGLTFANVTGFSVLNGLCAAM EPICGQANGAKNYRLLQKTLVMAVLMLLVVTVPVAFLWLNVDKILICFGQEEDISLVAKKYLFYLLPDLLITCFLSPLKSYLTSQCVTVPIMLSSALGLA FHVPVNILMSKTKGLEGVSMATWMTDLLIVILLGVYVFVSESKKGRNWKEGGWLEQDSRDWIKLLKLSGPCCLSTCLEWWCWEILLLLTGHLANAKQAVS VLAIVMNFDYLLFSVMQSLATCVSCRVSNELGSNHPDNASRSSLVSMASGVALGLVGSSVMVAVGGKWGALFSKDEGVRKGVKKMMLLMAVLEVVNFPMV ACGGIVRGTARPWLAMYANVGGFYLVALPLCVALAFKVGLGLSGLLIGFLVGLTACLALLVFFIARLDWKVEAFKAQKLACCLSPDPIEEGESSQMTEQT VHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22790			MATE efflux family protein (.1...		Lus10007006 [exp]	0	1
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023338 [exp]	2.4	0.8229
AT1G49470			Family of unknown function (DU...		Lus10021008 [exp]	4.0	0.7788
AT2G37180		PIP2C, PIP2;3, ...	RESPONSIVE TO DESICCATION 28, ...		Lus10026505 [exp]	5.7	0.7831
AT4G05150			Octicosapeptide/Phox/Bem1p fam...		Lus10018412 [exp]	6.6	0.7655
AT5G43180			Protein of unknown function, D...		Lus10025217 [exp]	6.7	0.7922
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Lus10031202 [exp]	7.1	0.7960
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Lus10005157 [exp]	7.7	0.7990
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10011042 [exp]	11.6	0.8031
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10039404 [exp]	13.0	0.8175
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10003217 [exp]	19.1	0.7812

Compare expression of checked genes

Lus10007006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.