Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14750 47 / 9e-08 MYB WER1, WER, AtMYB66 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) AT1G22640 46 / 2e-07 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT3G27920 46 / 3e-07 MYB GL1, ATMYB0, AtGL1 GLABRA 1, myb domain protein 0 (.1) AT5G40330 45 / 6e-07 MYB ATMYBRTF, ATMYB23 myb domain protein 23 (.1) AT4G34990 44 / 2e-06 MYB ATMYB32 myb domain protein 32 (.1) AT5G12870 43 / 4e-06 MYB ATMYB46 myb domain protein 46 (.1) AT4G17785 42 / 6e-06 MYB ATMYB39 myb domain protein 39 (.1) AT2G16720 42 / 6e-06 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT4G01680 42 / 7e-06 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT1G71030 41 / 1e-05 MYB MYBL2, ATMYBL2 ARABIDOPSIS MYB-LIKE 2, MYB-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001043 [exp] 116 / 8e-35 AT1G22640 119 / 1e-33 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10002559 [exp] 45 / 1e-06 AT5G12870 225 / 7e-72 myb domain protein 46 (.1) Lus10040139 [exp] 44 / 2e-06 AT5G16770 231 / 9e-76 myb domain protein 9 (.1.2) Lus10031281 [exp] 44 / 2e-06 AT3G08500 228 / 1e-72 myb domain protein 83 (.1) Lus10009448 [exp] 43 / 3e-06 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10039610 [exp] 43 / 4e-06 AT5G12870 219 / 3e-69 myb domain protein 46 (.1) Lus10029520 [exp] 43 / 4e-06 AT5G12870 220 / 2e-69 myb domain protein 46 (.1) Lus10032298 [exp] 43 / 4e-06 AT1G63910 260 / 2e-82 myb domain protein 103 (.1) Lus10027369 [exp] 43 / 5e-06 AT5G12870 218 / 5e-69 myb domain protein 46 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G041100 [exp] 49 / 1e-08 AT1G22640 212 / 2e-69 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.010G114000 [exp] 49 / 3e-08 AT4G38620 243 / 6e-81 myb domain protein 4 (.1) Potri.018G005300 [exp] 47 / 8e-08 AT1G22640 186 / 9e-57 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.008G128500 [exp] 47 / 1e-07 AT4G38620 217 / 1e-70 myb domain protein 4 (.1) Potri.004G088100 [exp] 47 / 2e-07 AT4G09460 227 / 5e-75 myb domain protein 6 (.1) Potri.017G128900 [exp] 46 / 3e-07 AT4G09460 222 / 6e-73 myb domain protein 6 (.1) Potri.001G258700 [exp] 45 / 7e-07 AT5G12870 219 / 4e-70 myb domain protein 46 (.1) Potri.001G267300 [exp] 45 / 7e-07 AT3G08500 266 / 1e-87 myb domain protein 83 (.1) Potri.006G275900 [exp] 45 / 8e-07 AT1G22640 186 / 1e-57 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.012G080400 [exp] 44 / 8e-07 AT5G14750 210 / 3e-69 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007008 pacid=23168953 polypeptide=Lus10007008 locus=Lus10007008.g ID=Lus10007008.BGIv1.0 annot-version=v1.0 ATGAGCCCTTATGAGAACGACGCCATTTTCAAACAAGTCAGCAATAGCAAACAAGTTGAAGAAGCGACCAGCCATGGCGCCCAAGGCTGTGGAAAGAGGT GTCGGCTCAGAGGGATGGAATCTTCGACTTCAAAAGTACCAGACGTCGACGAGGACGACATGAAACGGCGTCGTAAATTCGGCGAGGACGAAGAAGATCT CATTATCAAGCTCCACTCCCTCCTCGGTGACCAGTAA
AA sequence Show only first row Show all	>Lus10007008 pacid=23168953 polypeptide=Lus10007008 locus=Lus10007008.g ID=Lus10007008.BGIv1.0 annot-version=v1.0 MSPYENDAIFKQVSNSKQVEEATSHGAQGCGKRCRLRGMESSTSKVPDVDEDDMKRRRKFGEDEEDLIIKLHSLLGDQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14750	MYB	WER1, WER, AtMY...	WEREWOLF 1, WEREWOLF, myb doma...		Lus10007008 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001036 [exp]	4.9	0.6625
AT3G47570			Leucine-rich repeat protein ki...		Lus10035429 [exp]	8.7	0.6353
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001037 [exp]	18.9	0.6126
AT4G25850		ORP4B	OSBP(oxysterol binding protein...		Lus10019869 [exp]	26.5	0.5331
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	27.2	0.5823
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	28.2	0.5823
AT5G18460			Protein of Unknown Function (D...		Lus10006861 [exp]	29.1	0.5823
AT2G17030			F-box family protein with a do...		Lus10022619 [exp]	37.1	0.5722
AT5G17730			P-loop containing nucleoside t...		Lus10041778 [exp]	39.1	0.5458
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10035616 [exp]	40.5	0.5696

Compare expression of checked genes

Lus10007008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.