Plant FIBer expression Database

Lus10007010 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G28780 46 / 3e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040846
[exp]
115 / 2e-30 AT2G28780 680 / 0.0 unknown protein
Lus10005903
[exp]
109 / 3e-28 AT2G28780 720 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G237300
[exp]
55 / 2e-09 AT2G28780 785 / 0.0 unknown protein
Potri.009G028600
[exp]
52 / 4e-08 AT2G28780 761 / 0.0 unknown protein
Potri.006G082000
[exp]
41 / 0.0001 AT2G28780 555 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10007010 pacid=23168975 polypeptide=Lus10007010 locus=Lus10007010.g ID=Lus10007010.BGIv1.0 annot-version=v1.0
ATGAAGGCACGTAGATTAGTTGCAGGGAACTCCTACAACTTATTTGTGGTGAAGACGAACTGCAAGTTTGCAGCTGAAAATGCGTCGGAGAGGCTGAAGC
TGTACGTGAAAGCATCCGCCTCCCTCACTCGCGTCAAAACATTGGCTTCCTCTGCCACCAAATTCCTCAACAAGATTAAGCTCCACCAGGAAAGCACCAA
AATGGGAAACTTTTCCGCTGATCCTGCTTGGATACAATCGCCCAGTGAATCTAGTACCAAATTGCAGGAAATCGAGATGCTCTTCAGAGGAATGGAATTA
CCTCTGTCGTCTTCTTCACCGTCGTCAAGATTCAGTCATGGATCAGAATCCAAACAGAGCTTACAACACTTACAAAACACATCAGCCGATCGCTTAAACA
AATCATTAAATCAAACTCCTCCATCTCTGATTCATCTCCCATCGTCCCGGAATCCACAACCGACACCTTAA
AA sequence
>Lus10007010 pacid=23168975 polypeptide=Lus10007010 locus=Lus10007010.g ID=Lus10007010.BGIv1.0 annot-version=v1.0
MKARRLVAGNSYNLFVVKTNCKFAAENASERLKLYVKASASLTRVKTLASSATKFLNKIKLHQESTKMGNFSADPAWIQSPSESSTKLQEIEMLFRGMEL
PLSSSSPSSRFSHGSESKQSLQHLQNTSADRLNKSLNQTPPSLIHLPSSRNPQPTP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G28780 unknown protein Lus10007010
[exp]
0 1
AT2G38760 ANN3, ANNAT3 annexin 3 (.1) Lus10024174
[exp]
3.0 0.9058
AT2G44840 AP2_ERF ATERF13, EREBP ethylene-responsive element bi... Lus10029319
[exp]
3.9 0.9308
AT3G54720 MFO1, HPT, COP2... PRIMORDIA TIMING, Multifolia, ... Lus10017223
[exp]
8.9 0.8584
AT2G47460 MYB PFG1, ATMYB12 PRODUCTION OF FLAVONOL GLYCOSI... Lus10001458
[exp]
12.6 0.9044
AT1G14180 RING/U-box superfamily protein... Lus10036764
[exp]
16.0 0.9153
AT5G13180 NAC VNDIP2, ANAC083... VND-interacting 2, NAC domain ... Lus10001809
[exp]
19.4 0.8984
AT4G30200 VEL1, VIL2 VIN3-Like 2, vernalization5/VI... Lus10025841
[exp]
22.8 0.8961
AT1G14185 Glucose-methanol-choline (GMC)... Lus10032347
[exp]
27.0 0.8976
Lus10007012
[exp]
28.3 0.8735
AT4G39150 DNAJ heat shock N-terminal dom... Lus10017980
[exp]
29.1 0.9015

Lus10007010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.