Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007009 [exp] 335 / 5e-115 ND / Lus10006666 [exp] 124 / 2e-34 ND / Lus10026358 [exp] 114 / 8e-29 ND 42 / 6e-05 Lus10028788 [exp] 111 / 3e-28 ND / Lus10042300 [exp] 104 / 1e-25 ND 35 / 0.008
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G114701 [exp] 67 / 6e-13 ND / Potri.009G114800 [exp] 60 / 1e-10 ND / Potri.004G153200 [exp] 41 / 0.0001 AT1G49310 48 / 2e-08 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10950 [flax] [poplar] Organ_specific Organ specific protein
Representative CDS sequence Show only first row Show all	>Lus10007012 pacid=23168961 polypeptide=Lus10007012 locus=Lus10007012.g ID=Lus10007012.BGIv1.0 annot-version=v1.0 ATGGCGCCGCCATCTCATATGCCTTTCATCACTCTCTTCCTGCTTGTACTGTTGGGAGGTCGTGTCAATGCAAGGAAACACCCAATAGACGATTACTGGA GATCTGTGATGAAAGATCAGCCAATGCCCAAAGCAATCGAATCTCTAGTGCCAGTTGCGAATTCCGTTCACGATGGTGTTCATTGTGATGATGGACTTCC CTCCAACGAGTTCGCCAAGGGGATCGAGTCGCAACCAAATCAAGCTTTCGGCTACAAGAACGGACTTCCTTCCAGCGAGTTCGCCAAGGGGATCGAGTCG CAACCAAATCAAGCTTTCGGCTACAAGAACGGACTTCCTTCCAGCGAGTTCGCCAAGGGGATCGAGTCGCAACCTAATCAAGCTTTCGGCTACAAGAACG GACTTCCTTCCAACGAGTTCGCCAAGGGGATCGAGTCGCAACCAAATCAAGCTTTCGGCTACAAGAACGGACTTCCTTCCAACGAGTTCGCCAAGGGGAT CGAGTCGCAACCAAATCAAGCTTTCGGCTACAAGAACGGACTTCCTTCCAGCGAGTTCGCCAAGGGGATCGAGTCACAACCTAATCAAGCTTTCGGCTAC AAGAACGGACTTCCTTCCAGCGAGTTCGCCAAGGGGATCGAGTCGCAACCAAATCAAGCGTTCTCCTACAAGAACGGACTCCCTTCTAACAAGTTCGCCA AGGGGATCGAGTCGCAACCTAATCAAACTTTCGGCTACAAGAACGGACTTCCTTCCAACGAGTTCGCCAAGGGGATCGAGTCACAACCTAATCAAGCTTT CGGCTACAAGGACGGACTTCCTTCCAACGAGTTCGCCAAGGAGATCGAGTCGCAACCTAATCAAGGCTTTGTGTCCGATAATTAA
AA sequence Show only first row Show all	>Lus10007012 pacid=23168961 polypeptide=Lus10007012 locus=Lus10007012.g ID=Lus10007012.BGIv1.0 annot-version=v1.0 MAPPSHMPFITLFLLVLLGGRVNARKHPIDDYWRSVMKDQPMPKAIESLVPVANSVHDGVHCDDGLPSNEFAKGIESQPNQAFGYKNGLPSSEFAKGIES QPNQAFGYKNGLPSSEFAKGIESQPNQAFGYKNGLPSNEFAKGIESQPNQAFGYKNGLPSNEFAKGIESQPNQAFGYKNGLPSSEFAKGIESQPNQAFGY KNGLPSSEFAKGIESQPNQAFSYKNGLPSNKFAKGIESQPNQTFGYKNGLPSNEFAKGIESQPNQAFGYKDGLPSNEFAKEIESQPNQGFVSDN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007012 [exp]	0	1
					Lus10007009 [exp]	1.4	0.9514
AT2G25810		TIP4;1	tonoplast intrinsic protein 4;...		Lus10037895 [exp]	3.7	0.9382
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027394 [exp]	4.2	0.9164
AT4G35160			O-methyltransferase family pro...		Lus10023986 [exp]	4.5	0.9172
AT5G01790			unknown protein		Lus10029060 [exp]	5.2	0.8965
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029319 [exp]	6.2	0.9323
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10012436 [exp]	8.5	0.8914
AT3G26590			MATE efflux family protein (.1...		Lus10036851 [exp]	9.4	0.9187
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10022883 [exp]	11.3	0.8969
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10002750 [exp]	12.2	0.8949

Compare expression of checked genes

Lus10007012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.