Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64300 506 / 7e-174 ATGCH, ATRIBA1, RFD1 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) AT2G22450 474 / 2e-162 riboflavin biosynthesis protein, putative (.1) AT5G59750 406 / 2e-135 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2) AT2G32030 102 / 8e-25 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G32020 86 / 3e-19 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT3G22560 82 / 9e-18 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006669 [exp] 881 / 0 AT5G64300 513 / 5e-179 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10012751 [exp] 516 / 3e-178 AT5G64300 755 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10035929 [exp] 513 / 8e-177 AT5G64300 763 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10025733 [exp] 511 / 5e-176 AT5G64300 757 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10023161 [exp] 509 / 7e-175 AT5G64300 744 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10040865 [exp] 395 / 7e-129 AT5G59750 714 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2) Lus10005882 [exp] 276 / 2e-85 AT5G59750 502 / 2e-175 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2) Lus10006668 [exp] 211 / 2e-64 AT2G32030 122 / 2e-35 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10032323 [exp] 186 / 1e-54 AT2G32030 107 / 6e-29 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G097300 [exp] 513 / 2e-176 AT5G64300 773 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.017G050400 [exp] 499 / 9e-172 AT5G64300 714 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.001G310500 [exp] 498 / 6e-171 AT5G64300 764 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.005G071600 [exp] 464 / 3e-159 AT5G64300 647 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.001G234900 [exp] 413 / 6e-138 AT5G59750 770 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2) Potri.008G154700 [exp] 125 / 7e-33 AT3G22560 177 / 3e-57 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.010G085600 [exp] 99 / 1e-23 AT2G32030 223 / 6e-75 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.008G154800 [exp] 91 / 4e-21 AT3G22560 225 / 3e-76 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.007G102900 [exp] 81 / 6e-18 AT3G22560 96 / 9e-26 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00926 [flax] [poplar] DHBP_synthase 3,4-dihydroxy-2-butanone 4-phosphate synthase PF00925 [flax] [poplar] GTP_cyclohydro2 GTP cyclohydrolase II
Representative CDS sequence Show only first row Show all	>Lus10007013 pacid=23168956 polypeptide=Lus10007013 locus=Lus10007013.g ID=Lus10007013.BGIv1.0 annot-version=v1.0 ATGGCAATGGCTACCCATGTTCATCTTTACACTTCCCTACATCTCTCTCATTCTCATTCTCATTCACAATTTCGAGATTTCGTCACTTTGGTCCCGTCTA CAAAGGCTGGAGCTAGTTCAAGATCAGGTGGTATTGCTACAACTAGAGCTGCCTCGTTGAATTCTGGGGATCAAGGCTCTATTCGTGAACAGCTATTAGC CAAACTAACTTCCAAGAGGAACACTAATGATATCTCAAATACTAGAGATGGATCATATGATACTAAGAATCAACATGATTTTGATGTTCCTACTCATGGA TTCAATTCCATCCCCGAGGCCGTCGAGGACATCCGCCAAGGAAAGATGGTGATAGTGGTGGATGATGAAGGAAGAGAGAACGAAGGAGACCTAATAATGG CGGCATCAAAGGCAACCCCAGAAGCCTTGAGTTTCATAGTCAAACATGGGACTGGCATTGTTTGTGTTAGCATGAAAAGTGACCATTTGGAGAGGTTGCA ACTGCCTTTGATGGTTCCTCCTCAACACAACAAAGACATTCTTGGTACTGCTTTTACGATCACCGTGGATGCAAAACATGGGACAACAACAGGAGTGTCA GCACAGGACAGGGCAACAACAATACTAGCACTTGCTTCTCATGGCTCAACTCCTCAACACTTCAACCGTCCAGGTCACATCTTCCCACTCCGATACACCG AAAGAGGTGTGCTGGCACGGCCAGGTCACACCGAGGCCTCTGCTGACCTGGCAATCCTCGCCGGCCTGGAGCCCGTGGCAGTGCTGACTGAGATCGTTGA CGATGACGGGTCCATGGCTAGGTTGCCTAGGTTGAAAGAGTTTGCTAAAGAGCACAACTTGAAGATCGTCTCCATATTCGATATGATCAGGTATTTGAAG AAGAGGGAGGGGACCGTGAAGCTGGTTGCGGCAGCTAGGATGCCGACCATGTTAGGGAACTTCAAAGCACATTGCTACGAGTCGTTGTTTGACGGCGTTG AGCACATTGCTATGGTCAAGGGCGAAATCGGAGATGGGGAGAATGTGCTGGTGAGGATACATTCGGAGTGCCTAGCCAACGACATCTTCGGGTCGAACGT TTGCGAATGTGGAGGCCAACTCGACGATGCCATGAAGCAAATGGAGGAAGCCGGGAGAGGTGTGTTGGTTTACCTCCGTAGGAACAAAGGCAAAGAGATC GATTTGGGAATCAATCTTCCTTCTTCTGTCACCGACCCCTTGAAACTCGATGCTAAAGAGTACAATGTCGCGGCCAAGATACTCAGAGATTTGGGTGTTG GCTCGATCAAATTGATTTCGGATAGCACGTCACAGTACAATGAGCTACAAGGTTATGGCTTCTCCATCGTCGAAACGGTGCCGTTATGCCCTCCAATTCC CCAGGAAAATGATAGCAATTACAAGGAAGCCCAAGAATTACTGATAAATATGGGCCTGTCAGTGTGGTACATACAAAGTTTCTGCATCCCACACCGATAC TGCCTGTCGGTGTGCATAGACGACCGGTCCATCGGGATGATGATGATCAACCCCGGAATCGGAGCTGTACCTGCGGGATCGTGGCGGAGTGGGTGCCTTG GAGCGCTAATGTCGCCAAGGTATTGGTCAAAGGGAGTGTGTACAAGAGCCATGGAGGTTGTTTTGGTGGATGGGTTTCGAGCTATACCGGAGATGGTGAG GCTAGAGGCGGTGACGGACGTGGAGAACAAAGGGGTGCATAAGATTGTGGAAAGAGTTGGGTTTCAAAGAGAAGGTGTGCTGAGAAAGTTCATGTTTCAT AGATGTGAGGATAGGGATATGGTCTTTTACAGTATGTTGGTTGATGATCAAAGGCGTCTTGCTTTGGTTCAAACGTTCACCAGCATCAGCTCAAGGCTTT GA
AA sequence Show only first row Show all	>Lus10007013 pacid=23168956 polypeptide=Lus10007013 locus=Lus10007013.g ID=Lus10007013.BGIv1.0 annot-version=v1.0 MAMATHVHLYTSLHLSHSHSHSQFRDFVTLVPSTKAGASSRSGGIATTRAASLNSGDQGSIREQLLAKLTSKRNTNDISNTRDGSYDTKNQHDFDVPTHG FNSIPEAVEDIRQGKMVIVVDDEGRENEGDLIMAASKATPEALSFIVKHGTGIVCVSMKSDHLERLQLPLMVPPQHNKDILGTAFTITVDAKHGTTTGVS AQDRATTILALASHGSTPQHFNRPGHIFPLRYTERGVLARPGHTEASADLAILAGLEPVAVLTEIVDDDGSMARLPRLKEFAKEHNLKIVSIFDMIRYLK KREGTVKLVAAARMPTMLGNFKAHCYESLFDGVEHIAMVKGEIGDGENVLVRIHSECLANDIFGSNVCECGGQLDDAMKQMEEAGRGVLVYLRRNKGKEI DLGINLPSSVTDPLKLDAKEYNVAAKILRDLGVGSIKLISDSTSQYNELQGYGFSIVETVPLCPPIPQENDSNYKEAQELLINMGLSVWYIQSFCIPHRY CLSVCIDDRSIGMMMINPGIGAVPAGSWRSGCLGALMSPRYWSKGVCTRAMEVVLVDGFRAIPEMVRLEAVTDVENKGVHKIVERVGFQREGVLRKFMFH RCEDRDMVFYSMLVDDQRRLALVQTFTSISSRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10007013 [exp]	0	1
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10029847 [exp]	3.9	0.8538
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10026333 [exp]	5.5	0.8310
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10013130 [exp]	7.1	0.8278
					Lus10024506 [exp]	7.2	0.7582
					Lus10017627 [exp]	11.2	0.7927
AT2G43870			Pectin lyase-like superfamily ...		Lus10011417 [exp]	13.7	0.7863
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Lus10012991 [exp]	14.7	0.7863
					Lus10012943 [exp]	15.1	0.7799
AT2G31750		UGT74D1	UDP-glucosyl transferase 74D1 ...		Lus10009409 [exp]	15.6	0.7863
AT1G17930			Aminotransferase-like, plant m...		Lus10031075 [exp]	16.4	0.7863

Compare expression of checked genes

Lus10007013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.