Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12430 1266 / 0 AtKINUa, ARK3, PAK phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) AT1G01950 1162 / 0 AtKINUb, ARK2 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) AT3G54870 517 / 5e-169 AtKINUc, CAE1, ARK1, MRH2 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) AT3G63480 208 / 1e-58 ATP binding microtubule motor family protein (.1.2) AT2G37420 203 / 9e-54 ATP binding microtubule motor family protein (.1) AT2G28620 201 / 7e-53 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45850 194 / 1e-50 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G44730 193 / 2e-50 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT3G19050 191 / 3e-49 POK2 phragmoplast orienting kinesin 2 (.1) AT5G60930 190 / 3e-49 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006670 [exp] 1586 / 0 AT1G12430 1143 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Lus10009241 [exp] 1182 / 0 AT1G01950 1353 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10038007 [exp] 1116 / 0 AT1G01950 1272 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10038696 [exp] 510 / 6e-165 AT1G01950 966 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10037965 [exp] 509 / 2e-163 AT1G01950 920 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10009073 [exp] 209 / 2e-55 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 206 / 2e-54 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10024429 [exp] 205 / 6e-54 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10025304 [exp] 204 / 6e-54 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117000 [exp] 1371 / 0 AT1G12430 1348 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Potri.001G115100 [exp] 1358 / 0 AT1G12430 1325 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Potri.014G070900 [exp] 1201 / 0 AT1G01950 1359 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Potri.002G149400 [exp] 1195 / 0 AT1G01950 1360 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Potri.010G227000 [exp] 536 / 2e-174 AT3G54870 938 / 0.0 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) Potri.008G035400 [exp] 284 / 5e-89 AT3G54870 345 / 8e-113 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) Potri.005G038900 [exp] 215 / 7e-61 AT3G63480 533 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.016G082400 [exp] 207 / 6e-55 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G082900 [exp] 206 / 8e-55 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.009G026000 [exp] 198 / 4e-52 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10007014 pacid=23168962 polypeptide=Lus10007014 locus=Lus10007014.g ID=Lus10007014.BGIv1.0 annot-version=v1.0 ATGTCGACGACTTCGTCTGCTTTTGGCACCACCACTACCACCACTGCTTCCTCCAATCACAGAAATGCCCCCCTCGCCAACGGCCGCACCAAGAACTCCT CCTCCTCCTCCTCCTCTTCCTCCGTCAAGTCCAAGACCGGACTCCGGAAGAGCGCTCCCGGTTCCCTCGGCAGTGGAGCTTCCACTGCTACTTCTTCTCC CAAGCATGATGCTGGAGTTTCGGGAAGAGTGAGAGTTGCGGTGAGGCTACGGCCGCGGAACGCCGAGGAAATGGTGGCCGACGCGGATTTCGCCGACTGC GTCGAGTTGCAGCCTGAGCTTAAGAGGCTGAAACTGCGGAAGAACAATTGGGATTCCGACACTTATGAGTTCGACGAGGTGCTCACTGAGTTCGCTTCAC AGAAACGCGTTTACGAAGTCGTCGCTAAACCCGTCGTTGAGAGTGTTTTAGATGGATATAATGGAACGGTTATGGCGTATGGACAGACTGGGACTGGGAA AACGTATACCGTTGGGCAACTTGGGGGTGAGGATATGGCTGCTCGCGGGATAATGGTGCGAGCTATGGAGGATATATTAGCGGGTGTTGCGCTGGAGACT GACTCAGTCTCGGTGTCTTATCTTCAGTTGTATATGGAGGCTATACAAGATCTTCTTGATCCAAATAATGACAATATTTCTATTGTGGAAGACCACAAAA CTGGAGATGTTTCATTGCCTGGAGCTACTCAAGTTGAGGTTAGGGACCAACATAGTTTTGTTGAGTTGCTTAAGTTCGGAGAAGCCCACCGCTTTGCAGC AAATACGGAATTGAATACTGAATCTTCGCGTAGTCATGCTATTCTGATGGTGAATGTGAAGAGGTCTGTTAAGGCGAAGGGTTCTGCTGTTTCAAGTGAA AATGGTAGCACCTTGCAGTCAGCCAAAAGTCTAAAGCCGTCTGTTGTTCGGAAAGGGAAGCTGGTTGTGGTTGATCTTGCTGGTTCAGAGCGAATTCTCA AATCAGGCTCCGAAGGGCATACACTTGAGGAAGCAAAATCCATAAATCTTTCTCTGAGTGCACTTGGGAAGTGCATTAATGCACTGGCAGAAAATAGTCC TCATATTCCAGTTCGTGATTCAAAGCTTACAAGATTGCTTCGGGATTCATTTGGAGGAACTGCACGAACTTCTCTTGTTATTACTATTGGTCCATCCCCT CGTCACCGTGGAGAAACAACCAGTACCATTATGTTTGGACAAAGGGCTATGAAGGTGGAGAACATGTTGAAACTGAAAGAGGAATTTGACTACAAAAGTT TGTCCAGAAGATTAGATATACAATTGGATAGAGTTATTGCAGAAAATGAAAGGCAGCAAAAGGTTTTCCAAGATGAAATCGAAAAAATAACAGCAGAAGC AGAAAGGCAACTTTATAACGCTGAAAGAAACTATACACAAGCATTGGAGGCAAGTTCTAGACAAGACTATACCAAGCGTGCACAACCATTTATCTTTACT AAGGAACGCTTCAAATATCAGAAAGAGTATTTGGAATCAATCAAGAAGCTAGAGGAGAAATATATGTTGAACCATAAAAAAAGCGTCAATGACGGGAACA AGCTTGGAAATAAAGATGTCGGTTTCAATGTCATACCTAATGGAAAGGAATCAAAAGTTGCTCCCATGGAGGAAAATGCGGAGATGAAAAAGTTGATTGA GAAGGAAACTGTTCAGAGGAAGGCTGCTGAAGAAGAAGTTCGGACTCTTAAGAGCCAGTTGGCTGAATCAAGGAGATCGGAGGCCTTGCAAAACTCTGAG ATAGTAAAGCTTCGCAAGATGCTTGAAGAAGAAGCTCACCAAAAAGAGAAACTGGAAACTGAAATAGGAAAGCTACAGAGTCACTTGCTTCAACTAAGTG TGGAGGCTGATGAGACAAGAAGGCAACTGGATTCGAGTGGCTCGGAGGAAGTTCTTACTAGTTTAGACTCTTTGATGCCTCAAGTCAGGCAACCTCATAT CGACAATTCAGAAACTGGAGATAAAGCCTCAGTTGCCAAACTATTTGAGCAAGTGGGTTTGCAAAAGATATTATCATTGCTTGAAGCAGAAGATGCTGAT GTACGGATCCATGCAGTGAAAGTGGTGGCGAATCTTGCGGCTGAAGAAGCAAATCAAGAGAAGATTGTAGAAGCCGGTGGCCTAACTTCTTTGTTAAGGC TACTCAAAAGTTCCGAAGATGAAACGATTCACAGAGTGGCTGCAGGAGCCATTGCAAATCTTGCAATGAATGAAACCAACCAGGAGCTGATAATGAATCA AGGTGGAATTCGTTTGCTATCGAATACCGCTTCCAAAGCAGAGGACCCGCAAACTCTTCGTATGGTAGCTGGAGCTATTGCAAACCTCTGTGGCAACGAT AAATTGCAAATGAAGCTGAGAGGTGAAGGTGGCATCAAGGCCTTGCTTGGTATGGTCAGATGCAGGCATCAAGATGTTCTTTCACAAGTCGCCAGGGGAA TCGCCAATTTCGCGAAATGCGAATCAAGGGCATCCGCTCAAGGAACAAAGACAGGAAGGTCGCTACTGATAGAGGATGGCGCACTTCCATGGATAGTACA GAACGCAAACAACGAAGCCGCATCAGTAAGGCGCCACATCGAACTTGCATTATGCCACTTAGCACAACACGAAGTGAACGCAAAAGACATGATCAGTGGC GGTGCAGTCCGGGAAATGGTCCGCATCTCGCGGGACTGTCCCAGGGAAGACATACGGTCTCTTGCACACAGAACGCTAACCGCCAGCACGAGTTTCGTGG AGGAATTGAGGCGTCTAGGCTAG
AA sequence Show only first row Show all	>Lus10007014 pacid=23168962 polypeptide=Lus10007014 locus=Lus10007014.g ID=Lus10007014.BGIv1.0 annot-version=v1.0 MSTTSSAFGTTTTTTASSNHRNAPLANGRTKNSSSSSSSSSVKSKTGLRKSAPGSLGSGASTATSSPKHDAGVSGRVRVAVRLRPRNAEEMVADADFADC VELQPELKRLKLRKNNWDSDTYEFDEVLTEFASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTYTVGQLGGEDMAARGIMVRAMEDILAGVALET DSVSVSYLQLYMEAIQDLLDPNNDNISIVEDHKTGDVSLPGATQVEVRDQHSFVELLKFGEAHRFAANTELNTESSRSHAILMVNVKRSVKAKGSAVSSE NGSTLQSAKSLKPSVVRKGKLVVVDLAGSERILKSGSEGHTLEEAKSINLSLSALGKCINALAENSPHIPVRDSKLTRLLRDSFGGTARTSLVITIGPSP RHRGETTSTIMFGQRAMKVENMLKLKEEFDYKSLSRRLDIQLDRVIAENERQQKVFQDEIEKITAEAERQLYNAERNYTQALEASSRQDYTKRAQPFIFT KERFKYQKEYLESIKKLEEKYMLNHKKSVNDGNKLGNKDVGFNVIPNGKESKVAPMEENAEMKKLIEKETVQRKAAEEEVRTLKSQLAESRRSEALQNSE IVKLRKMLEEEAHQKEKLETEIGKLQSHLLQLSVEADETRRQLDSSGSEEVLTSLDSLMPQVRQPHIDNSETGDKASVAKLFEQVGLQKILSLLEAEDAD VRIHAVKVVANLAAEEANQEKIVEAGGLTSLLRLLKSSEDETIHRVAAGAIANLAMNETNQELIMNQGGIRLLSNTASKAEDPQTLRMVAGAIANLCGND KLQMKLRGEGGIKALLGMVRCRHQDVLSQVARGIANFAKCESRASAQGTKTGRSLLIEDGALPWIVQNANNEAASVRRHIELALCHLAQHEVNAKDMISG GAVREMVRISRDCPREDIRSLAHRTLTASTSFVEELRRLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Lus10007014 [exp]	0	1
AT2G03060	MADS	AGL30	AGAMOUS-like 30 (.1.2)		Lus10030450 [exp]	3.7	0.8857
AT1G72410			COP1-interacting protein-relat...		Lus10008140 [exp]	3.9	0.9065
AT3G12020			P-loop containing nucleoside t...		Lus10016236 [exp]	5.3	0.8703
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Lus10040085 [exp]	6.8	0.8619
AT2G26100			Galactosyltransferase family p...		Lus10023955 [exp]	8.4	0.8887
AT2G27900			unknown protein		Lus10009613 [exp]	8.7	0.8907
AT4G38200			SEC7-like guanine nucleotide e...		Lus10001620 [exp]	8.8	0.8952
AT2G45900			Phosphatidylinositol N-acetygl...		Lus10028147 [exp]	9.0	0.8811
AT1G45207			Remorin family protein (.2)		Lus10009750 [exp]	9.5	0.8691
AT4G11450			Protein of unknown function (D...		Lus10035493 [exp]	9.8	0.8836

Compare expression of checked genes

Lus10007014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.