Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12440 199 / 5e-66 A20/AN1-like zinc finger family protein (.1.2) AT4G12040 187 / 2e-61 AtSAP7 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) AT4G22820 170 / 2e-54 A20/AN1-like zinc finger family protein (.1.2) AT2G36320 135 / 8e-41 A20/AN1-like zinc finger family protein (.1) AT2G27580 134 / 2e-40 A20/AN1-like zinc finger family protein (.1.2) AT1G51200 114 / 1e-32 A20/AN1-like zinc finger family protein (.1.2.3.4) AT3G52800 111 / 2e-31 A20/AN1-like zinc finger family protein (.1) AT4G25380 97 / 2e-26 AtSAP10, SAP10 Arabidopsis thaliana stress-associated protein 10, stress-associated protein 10 (.1) AT4G14225 95 / 2e-25 A20/AN1-like zinc finger family protein (.1) AT3G12630 93 / 3e-24 SAP5 stress associated protein 5, A20/AN1-like zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006671 [exp] 271 / 2e-94 AT1G12440 204 / 3e-68 A20/AN1-like zinc finger family protein (.1.2) Lus10028903 [exp] 231 / 1e-78 AT1G12440 205 / 3e-68 A20/AN1-like zinc finger family protein (.1.2) Lus10008912 [exp] 229 / 6e-78 AT1G12440 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2) Lus10031833 [exp] 135 / 6e-41 AT1G51200 186 / 5e-61 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10003246 [exp] 135 / 8e-41 AT2G36320 201 / 3e-67 A20/AN1-like zinc finger family protein (.1) Lus10031262 [exp] 129 / 2e-38 AT1G51200 187 / 2e-61 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10035603 [exp] 109 / 3e-31 AT2G36320 152 / 3e-48 A20/AN1-like zinc finger family protein (.1) Lus10030150 [exp] 108 / 1e-30 AT4G12040 119 / 8e-35 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) Lus10015697 [exp] 92 / 1e-23 AT3G12630 178 / 1e-57 stress associated protein 5, A20/AN1-like zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G115000 [exp] 206 / 8e-69 AT4G12040 169 / 4e-54 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) Potri.003G117100 [exp] 202 / 3e-67 AT1G12440 170 / 2e-54 A20/AN1-like zinc finger family protein (.1.2) Potri.003G205500 [exp] 135 / 6e-41 AT1G51200 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.009G144100 [exp] 133 / 3e-40 AT2G27580 166 / 5e-53 A20/AN1-like zinc finger family protein (.1.2) Potri.001G018600 [exp] 132 / 9e-40 AT1G51200 203 / 2e-67 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.006G056500 [exp] 131 / 2e-39 AT1G51200 167 / 2e-53 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.016G051700 [exp] 130 / 6e-39 AT1G51200 164 / 3e-52 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.004G184300 [exp] 128 / 4e-38 AT2G27580 156 / 4e-49 A20/AN1-like zinc finger family protein (.1.2) Potri.007G078500 [exp] 120 / 5e-35 AT4G12040 120 / 6e-35 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) Potri.015G131900 [exp] 112 / 4e-32 AT4G22820 123 / 2e-36 A20/AN1-like zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01754 [flax] [poplar] zf-A20 A20-like zinc finger PF01428 [flax] [poplar] zf-AN1 AN1-like Zinc finger
Representative CDS sequence Show only first row Show all	>Lus10007015 pacid=23168980 polypeptide=Lus10007015 locus=Lus10007015.g ID=Lus10007015.BGIv1.0 annot-version=v1.0 ATGGGTTCAGAGCAGAACGAAGGAACAAGCTTCCCGCCGTCGGAGCCGATCCTCTGCGTCAACGGATGTGGGTTCTTCGGCTCGTCGTCGAACATGAACC TCTGTTCGAAGTGCTACCGGGACATACGTGCCACGGAGGAGCAAGCGGCGTCGGCGAAGGCCGTCATGGAGAAGACCCTCAGCTTCAAATCGAATACGAC GACGAAGCCGGTGGTCGTGAAACCGGCGGCGGTGATTGCGCCGGAGAAGTTGGTGATCGGTGGTGATTCGTCGTCCTCCTCAGCGGTGGCGGTGGAGACG GTGAAGGTGGCGAACAGGTGTTTGACCTGCAACAAGCGGGTGGGGTTGACCGGGTTCAAGTGCAAGTGCGGGTCGACGTTCTGCGGGTCGCATAGGTATC CGGAGAACCACGAATGCGACTACGATTTCAAGGAAGCGGGCAGGGAAGCGATCGCGAAGGCGAATCCGGTGGTGAAGGCTGATAAGGTGGACAGGTTCTG A
AA sequence Show only first row Show all	>Lus10007015 pacid=23168980 polypeptide=Lus10007015 locus=Lus10007015.g ID=Lus10007015.BGIv1.0 annot-version=v1.0 MGSEQNEGTSFPPSEPILCVNGCGFFGSSSNMNLCSKCYRDIRATEEQAASAKAVMEKTLSFKSNTTTKPVVVKPAAVIAPEKLVIGGDSSSSSAVAVET VKVANRCLTCNKRVGLTGFKCKCGSTFCGSHRYPENHECDYDFKEAGREAIAKANPVVKADKVDRF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12440			A20/AN1-like zinc finger famil...		Lus10007015 [exp]	0	1
AT1G12440			A20/AN1-like zinc finger famil...		Lus10006671 [exp]	1.0	0.8833
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10017281 [exp]	4.2	0.8351
AT1G17730		CHMP1B, VPS46.1	CHARGED MULTIVESICULAR BODY PR...		Lus10037607 [exp]	4.5	0.8233
AT1G25400			unknown protein		Lus10041438 [exp]	4.5	0.8268
AT1G13360			unknown protein		Lus10034310 [exp]	6.5	0.8350
AT3G53390			Transducin/WD40 repeat-like su...		Lus10000150 [exp]	9.2	0.7524
AT3G61320			Bestrophin-like protein (.1)		Lus10037849 [exp]	12.0	0.7806
AT5G43260			chaperone protein dnaJ-related...		Lus10015783 [exp]	14.3	0.7698
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10000595 [exp]	15.2	0.7581
AT2G39050		ArathEULS3	Euonymus lectin S3, hydroxypro...		Lus10006551 [exp]	17.9	0.8010

Compare expression of checked genes

Lus10007015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.