Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26900 559 / 0 BASS2 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) AT1G78560 231 / 1e-71 Sodium Bile acid symporter family (.1) AT3G25410 171 / 1e-48 Sodium Bile acid symporter family (.1) AT4G22840 153 / 4e-42 Sodium Bile acid symporter family (.1) AT4G12030 151 / 2e-41 BAT5, BASS5 BILE ACID:SODIUM SYMPORTER FAMILY PROTEIN 5, bile acid transporter 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006672 [exp] 713 / 0 AT2G26900 603 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Lus10005565 [exp] 228 / 1e-70 AT1G78560 549 / 0.0 Sodium Bile acid symporter family (.1) Lus10013700 [exp] 229 / 2e-67 AT1G78560 554 / 0.0 Sodium Bile acid symporter family (.1) Lus10035803 [exp] 192 / 1e-56 AT1G78560 224 / 5e-69 Sodium Bile acid symporter family (.1) Lus10036583 [exp] 191 / 3e-56 AT2G26900 229 / 4e-71 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Lus10025862 [exp] 180 / 5e-52 AT3G25410 542 / 0.0 Sodium Bile acid symporter family (.1) Lus10038237 [exp] 177 / 5e-51 AT3G25410 544 / 0.0 Sodium Bile acid symporter family (.1) Lus10028901 [exp] 152 / 2e-40 AT4G22840 464 / 4e-160 Sodium Bile acid symporter family (.1) Lus10008914 [exp] 150 / 1e-39 AT4G22840 466 / 3e-161 Sodium Bile acid symporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G074400 [exp] 600 / 0 AT2G26900 554 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Potri.011G103200 [exp] 224 / 2e-69 AT1G78560 496 / 9e-176 Sodium Bile acid symporter family (.1) Potri.003G008700 [exp] 191 / 5e-56 AT1G78560 238 / 2e-74 Sodium Bile acid symporter family (.1) Potri.014G178000 [exp] 177 / 5e-51 AT3G25410 486 / 5e-171 Sodium Bile acid symporter family (.1) Potri.003G117300 [exp] 147 / 1e-39 AT4G22840 500 / 6e-177 Sodium Bile acid symporter family (.1) Potri.008G021600 [exp] 42 / 0.0008 AT3G56160 432 / 6e-150 Sodium Bile acid symporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF01758 [flax] [poplar] SBF Sodium Bile acid symporter family
Representative CDS sequence Show only first row Show all	>Lus10007016 pacid=23168951 polypeptide=Lus10007016 locus=Lus10007016.g ID=Lus10007016.BGIv1.0 annot-version=v1.0 ATGACTTCCATGTCTAGAATTGTGGCCAAAGACTGCCACTTTACTACTGCTGCAGCTCTTCATAAGCCTTGTAGCCCTTCTAGTTTGTGTACCAGAAGGC TGAGTACTCATCTTGATGTTAAAGGTTGGAACTTGACGCCTATCAATGGAAGGATTTGCGCATCGCAAAGCAAGCCAAATGTTCCAGCTTTTCATATGCC AGCGGCTTCCCCTATGATAATGCAGACTTCTAGGAACTCGGTGGTTTTATGCAATGCTGCAACAAATTTATCTGGAGATGTTCCCAGCAGCAACCCTACT ACGGGAATGAGCCAGTATGAACGGATAATCGAAACCTTGACGACTCTATTTCCCGTCTGGGTCATCTTAGGCACCATCATTGGCATCTACAAGCCATCTG CGGTTACATGGTTGGAGACAGATCTATTCACTCTTGGCCTGGGTTTCCTTATGCTTTCCATGGGATTAACTTTGAAGTTTGAAGACTTTAGACGGTGTTT GAGGAATCCCTGGACTGTTGGTGTAGGATTCCTTGCTCAGTACTTGATCAAGCCCCTTTTAGGCTTTGCGATTGCAATGACTCTGAAGCTATCTGCCCCA CTCGCAACTGGTCTTATTCTGGTATCTTGCTGCCCGGGAGGCCAGGCTTCAAATGTTGCAACATATATATCTAAGGGAAATGTGGCACTTTCAGTTCTTA TGACAACTTGTTCTACTATCGGAGCTATTATCATGACACCACTTCTTACCAAGCTTCTTGCCGGTCAGCTTGTGCCTGTCGATGCTGCTGGTCTGGCACT GAGTACATTTCAGGTTGTGCTAATGCCAACTATTGTCGGAGTGCTAGCAAACGAGTTTTTCCCAAAGTTCACTTCAAAAATTATCTCCATAACACCTTTA ATTGGAGTTATTCTCACTACCTTGCTCTGTGCCAGTCCTATTGGGCAAGTTGCAGACGTTTTGAAAACACAAGGAGCGCAGCTAATACTTCCAGTAGCCT TTCTTCACGCTACTGCGTTCGCCATCGGTTACTGGATTTCAAAGCTATCGTTCGGCGAATCCACTTCTCGTACCATTTCAATAGAATGCGGAATGCAGAG TTCTGCACTGGGATTTCTGCTTGCTCAGAAGCATTTCACAAACCCCCTAGTTGCCGTGCCTTCTGCTGTTAGCGTCGTCGCAATGGCGCTTGGTGGTAGT GCTCTTGCCGTTTTCTGGAGGAACATGCCGATCCCGGTGGATGACAAGGATGACTTCAAGGAGTAA
AA sequence Show only first row Show all	>Lus10007016 pacid=23168951 polypeptide=Lus10007016 locus=Lus10007016.g ID=Lus10007016.BGIv1.0 annot-version=v1.0 MTSMSRIVAKDCHFTTAAALHKPCSPSSLCTRRLSTHLDVKGWNLTPINGRICASQSKPNVPAFHMPAASPMIMQTSRNSVVLCNAATNLSGDVPSSNPT TGMSQYERIIETLTTLFPVWVILGTIIGIYKPSAVTWLETDLFTLGLGFLMLSMGLTLKFEDFRRCLRNPWTVGVGFLAQYLIKPLLGFAIAMTLKLSAP LATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLALSTFQVVLMPTIVGVLANEFFPKFTSKIISITPL IGVILTTLLCASPIGQVADVLKTQGAQLILPVAFLHATAFAIGYWISKLSFGESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVAMALGGS ALAVFWRNMPIPVDDKDDFKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10007016 [exp]	0	1
AT1G24610			Rubisco methyltransferase fami...		Lus10021783 [exp]	1.0	0.9640
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10006672 [exp]	2.0	0.9599
AT4G16490			ARM repeat superfamily protein...		Lus10014691 [exp]	2.8	0.9368
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10032542 [exp]	3.5	0.9397
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Lus10042349 [exp]	3.7	0.9180
AT1G21600		PTAC6	plastid transcriptionally acti...		Lus10018866 [exp]	3.9	0.9364
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Lus10038140 [exp]	4.2	0.9294
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10028517 [exp]	4.6	0.9277
AT5G10770			Eukaryotic aspartyl protease f...		Lus10042427 [exp]	5.3	0.9070
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10013942 [exp]	6.9	0.9270

Compare expression of checked genes

Lus10007016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.