Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60890 46 / 8e-08 ZPR2 LITTLE ZIPPER 2, protein binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006673 [exp] 151 / 3e-49 AT3G60890 47 / 4e-08 LITTLE ZIPPER 2, protein binding (.1.2) Lus10028902 [exp] 94 / 3e-26 AT3G60890 59 / 1e-12 LITTLE ZIPPER 2, protein binding (.1.2) Lus10008913 [exp] 87 / 5e-24 AT3G60890 58 / 2e-12 LITTLE ZIPPER 2, protein binding (.1.2) Lus10021375 [exp] 41 / 1e-05 AT3G52770 77 / 3e-20 LITTLE ZIPPER 3, protein binding (.1) Lus10017055 [exp] 40 / 2e-05 AT3G52770 77 / 5e-20 LITTLE ZIPPER 3, protein binding (.1) Lus10022725 [exp] 37 / 0.0003 AT3G52770 73 / 5e-19 LITTLE ZIPPER 3, protein binding (.1) Lus10014188 [exp] 36 / 0.0006 AT3G52770 72 / 1e-18 LITTLE ZIPPER 3, protein binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117200 [exp] 82 / 1e-21 AT3G60890 63 / 4e-14 LITTLE ZIPPER 2, protein binding (.1.2) Potri.001G114900 [exp] 64 / 1e-14 AT3G60890 57 / 1e-11 LITTLE ZIPPER 2, protein binding (.1.2) Potri.014G071200 [exp] 61 / 2e-13 AT3G60890 62 / 1e-13 LITTLE ZIPPER 2, protein binding (.1.2) Potri.002G149600 [exp] 58 / 4e-12 AT3G60890 65 / 1e-14 LITTLE ZIPPER 2, protein binding (.1.2) Potri.006G083201 [exp] 42 / 9e-06 AT3G52770 54 / 2e-10 LITTLE ZIPPER 3, protein binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007017 pacid=23168957 polypeptide=Lus10007017 locus=Lus10007017.g ID=Lus10007017.BGIv1.0 annot-version=v1.0 ATGTGTATCGCCAGAGAAAACACTTCAAAGAGGAGGCAACAGCAACTCAAGAAGCAAAAGGTTCAAGTCATTGGACTCACCAGAAGTAGGAGATCAAGGT GTGGTGAGGGAATTACTGGGGAGAAGATCAAGGAGAATATGGAGTTGAAGAACTTGAAGCTCTACTTGGAGAATCAAAGCATCTACGAGGCGAACGAGAA GCTGAGGGAGAGAGCTTGCCTTCTTCACTTGGAGAATTTGGCTCTGATGAGGGAGTTGCAGAAGAAGCTCCTTCATTTGGATCACAACAAATATTAG
AA sequence Show only first row Show all	>Lus10007017 pacid=23168957 polypeptide=Lus10007017 locus=Lus10007017.g ID=Lus10007017.BGIv1.0 annot-version=v1.0 MCIARENTSKRRQQQLKKQKVQVIGLTRSRRSRCGEGITGEKIKENMELKNLKLYLENQSIYEANEKLRERACLLHLENLALMRELQKKLLHLDHNKY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Lus10007017 [exp]	0	1
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Lus10006673 [exp]	1.4	0.9013
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10028068 [exp]	2.8	0.8935
AT5G01090			Concanavalin A-like lectin fam...		Lus10035542 [exp]	3.5	0.9002
AT5G18460			Protein of Unknown Function (D...		Lus10003100 [exp]	8.2	0.9074
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020051 [exp]	10.0	0.8342
AT5G24760			GroES-like zinc-binding dehydr...		Lus10031890 [exp]	21.2	0.8606
AT3G16210			F-box family protein (.1)		Lus10015408 [exp]	26.2	0.8849
AT1G68585			unknown protein		Lus10021686 [exp]	27.7	0.8873
AT2G28110		IRX7, FRA8	IRREGULAR XYLEM 7, FRAGILE FIB...		Lus10041343 [exp]	36.4	0.8855
AT1G28270		RALFL4	ralf-like 4 (.1)		Lus10015316 [exp]	36.6	0.8534

Compare expression of checked genes

Lus10007017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.