Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12450 257 / 7e-85 SNARE associated Golgi protein family (.1) AT4G22850 248 / 3e-81 SNARE associated Golgi protein family (.1.2) AT4G12000 238 / 2e-77 SNARE associated Golgi protein family (.1) AT2G02370 187 / 2e-57 SNARE associated Golgi protein family (.1.2) AT1G22850 52 / 2e-07 SNARE associated Golgi protein family (.1) AT1G03260 50 / 5e-07 SNARE associated Golgi protein family (.1) AT5G19070 42 / 0.0004 SNARE associated Golgi protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006674 [exp] 439 / 4e-156 AT1G12450 365 / 4e-127 SNARE associated Golgi protein family (.1) Lus10008915 [exp] 315 / 2e-107 AT1G12450 338 / 5e-117 SNARE associated Golgi protein family (.1) Lus10028900 [exp] 287 / 2e-96 AT1G12450 348 / 9e-121 SNARE associated Golgi protein family (.1) Lus10012163 [exp] 186 / 2e-56 AT2G02370 401 / 4e-141 SNARE associated Golgi protein family (.1.2) Lus10007583 [exp] 162 / 2e-47 AT2G02370 399 / 2e-140 SNARE associated Golgi protein family (.1.2) Lus10006162 [exp] 51 / 4e-07 AT1G22850 394 / 2e-137 SNARE associated Golgi protein family (.1) Lus10041062 [exp] 50 / 6e-07 AT1G22850 377 / 2e-131 SNARE associated Golgi protein family (.1) Lus10021942 [exp] 49 / 2e-06 AT5G19070 343 / 9e-120 SNARE associated Golgi protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117400 [exp] 300 / 2e-101 AT1G12450 343 / 1e-118 SNARE associated Golgi protein family (.1) Potri.001G114600 [exp] 289 / 2e-97 AT1G12450 317 / 3e-108 SNARE associated Golgi protein family (.1) Potri.001G078700 [exp] 180 / 2e-54 AT2G02370 390 / 2e-136 SNARE associated Golgi protein family (.1.2) Potri.003G151800 [exp] 174 / 6e-52 AT2G02370 377 / 2e-131 SNARE associated Golgi protein family (.1.2) Potri.019G071900 [exp] 52 / 2e-07 AT1G22850 330 / 8e-113 SNARE associated Golgi protein family (.1) Potri.013G099600 [exp] 52 / 3e-07 AT1G22850 305 / 6e-102 SNARE associated Golgi protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [flax] [poplar] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Lus10007018 pacid=23168946 polypeptide=Lus10007018 locus=Lus10007018.g ID=Lus10007018.BGIv1.0 annot-version=v1.0 ATGACTTATAGACACGATGACGACGGAGTGGTTCCGGAGCTGAGGATGAGAGTGGAAGACGACGACGGCGACGGAGGAAAGAATCATGTTGTTGTTAGTA AGAGCGGGTACATGAGATTGAGAGGAGGAGAGCTAGAGGAAGAAGAAGGAGACGAAATGCTTCGTAAATCAGGGTCTGGCTTCTTCTGCTGGAGGTGGAG ATGGTGTGTTGTTTGGTACTGGTTAAAGCTCGCCGTTGTGTTTGCCTTCTTTGGCGGGTTGGCTTTCGTTGTGCTCAAATGGGTTGGTCCCTACTTCATG GACAAGGAGATCATTCCCATTATAAATTGGGAGACAGACACGTTTAGCACACCAGTGTTGGCACTTCTGGTGTTTGTATCAGTGGCATTGTTCCCAACTT TGCTATTGCCTTCCTCGCCTTCTATGTGGATTGCTGGGATGACTTTTGGTTATGGATATGGGTTCTTACTGCTTACTGCAGCACTTTGTATTGGAATCTC TCTTCCATTCTGCATTGGGTCTCTTTTCCTGCATAAGATTCAGGGATGGTTGGAGAAGTATCCGAAGCAGGCTTCGGTGTTGAGATCAGCTGGTGAAGGG AACTGGTTTCATCAGTTCCGTTCCGTGGCTTTGATAAGGGTTTCTCCGTTTCCTTACATCCTTTATAATTACTGTGCTGTTGCCACGCATGTCAAGTACG GTCCTTATTTGCTTGGATCAATAGTTGGTATGATCCCGGATACGTTTGTCACAATCTACACTGGGATACTCGTAGAGACCTTGGCAGACGCTTCACAGGA TGATCTGAACTTAACACCCTCGCAGATAGCCATGAATGTTGCCGGGTTCTGCTGCACTGCAGCCACCACAGTGTTCTTCACCGTGTACGCTAAAAGGCGA CTCAAGGCAATACAAGACGAACCACTTCTGTCGTAG
AA sequence Show only first row Show all	>Lus10007018 pacid=23168946 polypeptide=Lus10007018 locus=Lus10007018.g ID=Lus10007018.BGIv1.0 annot-version=v1.0 MTYRHDDDGVVPELRMRVEDDDGDGGKNHVVVSKSGYMRLRGGELEEEEGDEMLRKSGSGFFCWRWRWCVVWYWLKLAVVFAFFGGLAFVVLKWVGPYFM DKEIIPIINWETDTFSTPVLALLVFVSVALFPTLLLPSSPSMWIAGMTFGYGYGFLLLTAALCIGISLPFCIGSLFLHKIQGWLEKYPKQASVLRSAGEG NWFHQFRSVALIRVSPFPYILYNYCAVATHVKYGPYLLGSIVGMIPDTFVTIYTGILVETLADASQDDLNLTPSQIAMNVAGFCCTAATTVFFTVYAKRR LKAIQDEPLLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12450			SNARE associated Golgi protein...		Lus10007018 [exp]	0	1
AT1G12450			SNARE associated Golgi protein...		Lus10006674 [exp]	1.0	0.9022
AT2G16090		ATARI2, ARI2, A...	ARABIDOPSIS ARIADNE 2, ARIADNE...		Lus10026319 [exp]	6.0	0.8653
AT1G59580		ATMPK2	mitogen-activated protein kina...		Lus10010637 [exp]	6.2	0.8763
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10033263 [exp]	9.2	0.8573
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10027329 [exp]	9.9	0.8438
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10024391 [exp]	10.4	0.8122
AT1G29800			RING/FYVE/PHD-type zinc finger...		Lus10007320 [exp]	12.3	0.8455
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Lus10036464 [exp]	12.6	0.8706
AT4G08790			Nitrilase/cyanide hydratase an...		Lus10001975 [exp]	14.4	0.8150
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10036701 [exp]	17.9	0.8591

Compare expression of checked genes

Lus10007018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.