Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62950 506 / 3e-171 leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G12460 499 / 1e-168 Leucine-rich repeat protein kinase family protein (.1) AT2G26330 221 / 1e-62 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G62230 216 / 5e-61 ERL1 ERECTA-like 1 (.1.2) AT3G56370 216 / 6e-61 Leucine-rich repeat protein kinase family protein (.1) AT5G07180 216 / 7e-61 ERL2 ERECTA-like 2 (.1) AT5G46330 215 / 2e-60 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 213 / 1e-59 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G28040 211 / 6e-59 Leucine-rich receptor-like protein kinase family protein (.1) AT4G36180 205 / 6e-57 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006675 [exp] 883 / 0 AT1G12460 984 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031689 [exp] 220 / 3e-62 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2) Lus10025139 [exp] 219 / 4e-62 AT3G56370 1021 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022738 [exp] 214 / 3e-60 AT5G01890 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10031108 [exp] 214 / 3e-60 AT5G62230 1422 / 0.0 ERECTA-like 1 (.1.2) Lus10025223 [exp] 209 / 1e-58 AT3G56370 1026 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012877 [exp] 206 / 2e-57 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033926 [exp] 206 / 5e-57 AT1G75640 1348 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10038071 [exp] 204 / 7e-57 AT2G26330 1554 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117500 [exp] 641 / 0 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G114500 [exp] 629 / 0 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G027400 [exp] 218 / 3e-61 AT1G75640 1275 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G235100 [exp] 216 / 1e-60 AT1G75640 1231 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.014G147300 [exp] 214 / 5e-60 AT3G28040 1156 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.012G130400 [exp] 213 / 5e-60 AT5G62230 1412 / 0.0 ERECTA-like 1 (.1.2) Potri.001G467300 [exp] 205 / 8e-57 AT4G26540 1347 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.007G014700 [exp] 204 / 1e-56 AT4G36180 1298 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G008100 [exp] 203 / 2e-56 AT4G08850 565 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G233600 [exp] 203 / 2e-56 AT3G28040 1116 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10007019 pacid=23168978 polypeptide=Lus10007019 locus=Lus10007019.g ID=Lus10007019.BGIv1.0 annot-version=v1.0 ATGAGAAGGATTTGTCATTTCTGTCTTCTTTGTGCTCTCTTCCTGTTCGTGGATGCTCAGCAGCAAGCCAATGATGAGAAGGAGATCTTGCTGCAGTTTA AAGGAAACATCACTAGAGATCCTTACAACAGCTTGTCCACATGGGTTCCTACAGCGACAAGTCCTTGTGAGTTCAGTGGAGTGTTCTGCAACTCTGCTAG ATTCGTGGAGAGGATTGTGCTTTGGAACACTAGCCTCTCTGGAGTTCTCTCGCCGGCATTGTCAGGTTTGAGATCTCTGAGAATCTTGACATTGTATGGG AATCAGTTTACTGGGAGTATCCCGAATGAGTATTCACAGCTCGCCACATTGTGGAAGATTAATGTCAGTTCCAATGCTTTGTCCGGATCAATCCCGGAGT TCATTGGTGATTTGGGGAACGTTCGGTTTTTGGACTTGTCAAGGAATGGATTTGTTGGGGAGATACCATCAGCTTTGTTCAAGTTCTGCTTCAAGACCAA GTTTGTCTCTTTTGCTCATAATGGCCTTTCTGGTTCTATTCCTTTGTCGATTGTGAACTGTAGGAATCTAGAAGGTGTTGATTTCGCTTTCAACAATCTT ACTGGTGAATTGCCTCCTGGAATTTGTGATGTCCCTTTGCTACGGTATCTGTCATTGAGAAGCAATGTGTTGACTGGGAGTGTTCAAGAGGAAGTAGAGA CTTGCCAAAGGTTGAGTTTTATGGATCTTAGCAGCAATGAGTTCACTGGGTTGGCTCCATTCAAGGTTGTTGGATTGCAGAACATGACATATTTCAACGT CTCACAGAACGAGTTTCGTGGAGAGATTCCGGAATTGGAAATCTGCAGCGAGAGGCTGGAAATCTTTGATGTTTCGGGGAATGGCTTAGATGGTGGGATC CCGTTGAGCATTACAAAGTGCATAAATCTTGTGCTTTTTGACGTTGGATTCAACAGGTTGAATGGGAGCATTCCAGTTGAGATCACAGAGCTGAAAAGGC TTTTGGTTGTTAATCTGGGGAGCAATCCTATAGGTGGAATGATTCCTCCAGGTTTTGGAAGCATTGAGCTGCTTCTGGTTTTGGATTTCCACAATCTCAA CCTTTCTGGTCCAGTTCCTGAAGACATAAGCAATTGCAAGTTTCTCCGCGAGCTGGATATCTCTGGCAATGGCTTGAATGGAGAAATTCCTAGTACACTT TCCAACATAACTTCTTTGGAAGTTCTTGATCTACACAGCAATCATTTCAACGGAAGCATACCGGAGACACTTGGGAACTTCTCAATGCTCAAACTTCTCG ACCTGTCAGGAAACAATCTTTCTGGCACGATCCCAGCTTCTTTAGGAAAGCTGTCGAATCTAACTCATTTAAACCTATCATCCAACAGTCTATTTGGTCC AATTCCTCTCCAGGGATTCGGTCCGGCTCCATTCCTTAACAATTCGGGGCTATGTGGCCCTCCTTTACAGAATTCATGCAATAATGGGACAGCATCATCA TCCAAGAGAAGCAAAGTGCTTAGCAATTCAGTAATTGTGGCGAGCGCAGCGGAATTGTGGCGATCGTAG
AA sequence Show only first row Show all	>Lus10007019 pacid=23168978 polypeptide=Lus10007019 locus=Lus10007019.g ID=Lus10007019.BGIv1.0 annot-version=v1.0 MRRICHFCLLCALFLFVDAQQQANDEKEILLQFKGNITRDPYNSLSTWVPTATSPCEFSGVFCNSARFVERIVLWNTSLSGVLSPALSGLRSLRILTLYG NQFTGSIPNEYSQLATLWKINVSSNALSGSIPEFIGDLGNVRFLDLSRNGFVGEIPSALFKFCFKTKFVSFAHNGLSGSIPLSIVNCRNLEGVDFAFNNL TGELPPGICDVPLLRYLSLRSNVLTGSVQEEVETCQRLSFMDLSSNEFTGLAPFKVVGLQNMTYFNVSQNEFRGEIPELEICSERLEIFDVSGNGLDGGI PLSITKCINLVLFDVGFNRLNGSIPVEITELKRLLVVNLGSNPIGGMIPPGFGSIELLLVLDFHNLNLSGPVPEDISNCKFLRELDISGNGLNGEIPSTL SNITSLEVLDLHSNHFNGSIPETLGNFSMLKLLDLSGNNLSGTIPASLGKLSNLTHLNLSSNSLFGPIPLQGFGPAPFLNNSGLCGPPLQNSCNNGTASS SKRSKVLSNSVIVASAAELWRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62950			leucine-rich repeat transmembr...		Lus10007019 [exp]	0	1
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Lus10020120 [exp]	2.0	0.8833
AT1G12460			Leucine-rich repeat protein ki...		Lus10007020 [exp]	2.8	0.8524
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10037180 [exp]	3.7	0.8649
AT2G27060			Leucine-rich repeat protein ki...		Lus10026756 [exp]	6.9	0.8604
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Lus10000701 [exp]	7.5	0.8473
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Lus10037741 [exp]	8.0	0.8464
AT4G21300			Tetratricopeptide repeat (TPR)...		Lus10028855 [exp]	9.2	0.8308
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10024604 [exp]	10.7	0.8502
AT3G07210			unknown protein		Lus10038194 [exp]	12.5	0.8316
AT1G14020			O-fucosyltransferase family pr...		Lus10037144 [exp]	13.7	0.8130

Compare expression of checked genes

Lus10007019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.