Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12460 423 / 1e-141 Leucine-rich repeat protein kinase family protein (.1) AT1G62950 419 / 3e-140 leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G56370 259 / 6e-79 Leucine-rich repeat protein kinase family protein (.1) AT5G01890 237 / 1e-70 Leucine-rich receptor-like protein kinase family protein (.1) AT3G28040 234 / 3e-69 Leucine-rich receptor-like protein kinase family protein (.1) AT1G78530 194 / 8e-59 Protein kinase superfamily protein (.1) AT5G62710 192 / 3e-56 Leucine-rich repeat protein kinase family protein (.1) AT1G31420 191 / 2e-55 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT2G24230 192 / 9e-55 Leucine-rich repeat protein kinase family protein (.1) AT1G75820 191 / 4e-54 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006675 [exp] 676 / 0 AT1G12460 984 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025223 [exp] 251 / 5e-76 AT3G56370 1026 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025139 [exp] 248 / 1e-74 AT3G56370 1021 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030526 [exp] 240 / 1e-71 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012877 [exp] 237 / 1e-70 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022738 [exp] 224 / 6e-66 AT5G01890 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10037276 [exp] 221 / 9e-65 AT3G28040 1013 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10014174 [exp] 221 / 1e-64 AT5G01890 1032 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10035687 [exp] 221 / 1e-64 AT3G28040 1021 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G114500 [exp] 472 / 4e-160 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G117500 [exp] 469 / 1e-159 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G233600 [exp] 282 / 4e-87 AT3G28040 1116 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.014G147300 [exp] 278 / 1e-85 AT3G28040 1156 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.016G137000 [exp] 260 / 4e-79 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G108600 [exp] 258 / 3e-78 AT5G01890 1115 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G058600 [exp] 249 / 4e-75 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G091000 [exp] 246 / 9e-74 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G380800 [exp] 201 / 1e-61 AT1G78530 535 / 0.0 Protein kinase superfamily protein (.1) Potri.006G173800 [exp] 182 / 3e-54 AT1G52540 344 / 4e-117 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10007020 pacid=23168965 polypeptide=Lus10007020 locus=Lus10007020.g ID=Lus10007020.BGIv1.0 annot-version=v1.0 ATGAACATCAAAGCACGGGCAGGGGTGGAAAGTAGTAGGAACGAAGCAGTAGTAGTCATCGAGAGCACGCCACTAGGTTCGAGTTCGACAGATTCGAGTG TGAAGATAGGAAAGCTGGTTCTTTTCAGCAAAACACTACCTTCTAAGTATGAAGACTGGGTAGCTGGCACCAGATCTTTACTTGATAAGGAGTTTCTGAT AGGAGGTGGATGCATAGGTGTGGTGTATAGAACTAATTTCGAAGGTGGGGTTTCAATTGCAGTGAAAAAGCTTCAAACTTTGGGGAGGATCAGAAGCCAA GACGAATTCGAGCACGAAATTACACGGTTAGCCAACATCAGGCATCCGAGTTTGGTTTCGCTCCAAGGTTACTACTGGTCGATTTCCATGAAGTTGATCC TATCCGGATTTTGTCCGAACGGCAGCCTGGATCAGAACCTGCACGGGGTTGATTATCCCGGTACCAGTACTTATAATGTTGGTACGAGTACTGAATTGCA TTGGCCCAGGAGGTTTCAGATTGCCATTGGTATAGCCAGAGCACTTTCTTACCTTCACCATGACTGTAAACCCCCCATTCTCCATTTCAGCATCAAAGCC TCCAACATACTCTTGACCGAAAACTACGAGCCTAAGTTATCCGATTATGGGTTGGGGAAGTTCCTACCGATCTTGGATCCTCATGCATCGACCAGGCTGA ACAACGCTCCGGGTTACGTTGCTCCCGAGCTGCTTCAGAGTCTTAGAGTAAGTGACAAAGTTGATGTGTATAGTTTCGGAATAATTCTGTTGGAGCTCAT AACCGGGAAGAAACCAGTTATCTTCCTGTCAAACGAGGTGGTGGCATTGCGTGACTATGTTCGCAATCTGGTGGATCTCGGTCGTGCCTCTGATTGTTTC GACAGCAATCTGAGAGATCCTCCGGAGAGTGAGCTGATTCAGGTTATGAAACTCGGGTTGATCTGTACAACTGAAGTTCCTTCCAAGAGGCCAAGCATGG CTGAGGTCGTTCAAGTTCTTGAGTCTATCAGAAATGGAGCAGATTCTTCATAG
AA sequence Show only first row Show all	>Lus10007020 pacid=23168965 polypeptide=Lus10007020 locus=Lus10007020.g ID=Lus10007020.BGIv1.0 annot-version=v1.0 MNIKARAGVESSRNEAVVVIESTPLGSSSTDSSVKIGKLVLFSKTLPSKYEDWVAGTRSLLDKEFLIGGGCIGVVYRTNFEGGVSIAVKKLQTLGRIRSQ DEFEHEITRLANIRHPSLVSLQGYYWSISMKLILSGFCPNGSLDQNLHGVDYPGTSTYNVGTSTELHWPRRFQIAIGIARALSYLHHDCKPPILHFSIKA SNILLTENYEPKLSDYGLGKFLPILDPHASTRLNNAPGYVAPELLQSLRVSDKVDVYSFGIILLELITGKKPVIFLSNEVVALRDYVRNLVDLGRASDCF DSNLRDPPESELIQVMKLGLICTTEVPSKRPSMAEVVQVLESIRNGADSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12460			Leucine-rich repeat protein ki...		Lus10007020 [exp]	0	1
AT1G25570			Di-glucose binding protein wit...		Lus10034275 [exp]	2.0	0.7987
AT1G62950			leucine-rich repeat transmembr...		Lus10007019 [exp]	2.8	0.8524
AT1G12460			Leucine-rich repeat protein ki...		Lus10006675 [exp]	3.7	0.8626
AT5G10160			Thioesterase superfamily prote...		Lus10020419 [exp]	5.2	0.8298
AT3G25700			Eukaryotic aspartyl protease f...		Lus10034270 [exp]	5.3	0.7840
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10014507 [exp]	8.8	0.7878
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10015320 [exp]	13.1	0.7476
AT2G45050	GATA	GATA2	GATA transcription factor 2 (....		Lus10028178 [exp]	13.4	0.7466
AT3G20790			NAD(P)-binding Rossmann-fold s...		Lus10031814 [exp]	15.5	0.7576
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Lus10042564 [exp]	19.8	0.7616

Compare expression of checked genes

Lus10007020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.