Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62960 592 / 0 ACS10 ACC synthase 10 (.1) AT5G51690 541 / 0 ACS12 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) AT4G37770 413 / 1e-140 ACS8 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) AT4G26200 395 / 8e-134 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) AT2G22810 389 / 4e-131 ACC4, ACS4, ATACS4 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, 1-aminocyclopropane-1-carboxylate synthase 4 (.1) AT3G49700 387 / 3e-130 AtACS9, ACS9, ETO3 ETHYLENE OVERPRODUCING 3, 1-aminocyclopropane-1-carboxylate synthase 9 (.1) AT5G65800 384 / 4e-129 CIN5, ETO2, ACS5, ATACS5 ETHYLENE OVERPRODUCER 2, CYTOKININ-INSENSITIVE 5, ACC synthase 5 (.1) AT4G08040 374 / 2e-125 ACS11 1-aminocyclopropane-1-carboxylate synthase 11 (.1) AT1G01480 374 / 9e-125 AT-ACC2, ACS2 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) AT4G11280 364 / 6e-121 ATACS6, ACS6 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006676 [exp] 954 / 0 AT1G62960 620 / 0.0 ACC synthase 10 (.1) Lus10038899 [exp] 574 / 0 AT5G51690 702 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Lus10015023 [exp] 572 / 0 AT5G51690 704 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Lus10032695 [exp] 405 / 1e-137 AT4G26200 659 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10008579 [exp] 402 / 2e-136 AT4G26200 664 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10011565 [exp] 387 / 7e-130 AT4G37770 740 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10039647 [exp] 382 / 1e-127 AT4G37770 739 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10007223 [exp] 380 / 3e-127 AT4G37770 747 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10007910 [exp] 377 / 1e-125 AT3G61510 659 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117700 [exp] 706 / 0 AT1G62960 664 / 0.0 ACC synthase 10 (.1) Potri.015G132100 [exp] 620 / 0 AT5G51690 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Potri.018G067000 [exp] 421 / 1e-143 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.007G007800 [exp] 407 / 4e-138 AT4G37770 749 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.014G012600 [exp] 404 / 8e-137 AT4G37770 755 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.006G149600 [exp] 403 / 8e-137 AT4G26200 651 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.002G113900 [exp] 394 / 5e-133 AT4G37770 682 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.001G099400 [exp] 390 / 3e-131 AT4G11280 656 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.002G163700 [exp] 388 / 2e-130 AT3G61510 684 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Potri.003G132300 [exp] 381 / 7e-128 AT4G11280 659 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10007021 pacid=23168954 polypeptide=Lus10007021 locus=Lus10007021.g ID=Lus10007021.BGIv1.0 annot-version=v1.0 ATGAGAGTTATAATCCCTCTTCAAGGAGTTGTCCAAGGGAGCGGAGGAGTGTTCCTGGGTTCAGTAATCCCCTGCGCGCTCTTCTACTTCCTCCAGCTGT ATCTCAGGAGGAACCACGGAAGTTCCGACCCGGTGGAGCCCGAGGACCGGAATTCTCGGAATCCTGACACGGCGGATGAGCCCGGTCCGTCTGGGCAGCT TCTCCGTCGGACTTCTTCTCGGAATCTCTTGTCTCCGAGGACTCGGGCGTACGTTTCGAATCGTGCTGGCATGATAGCCAAAACTGGCGGCGGCGGTGGT GGTGGTTGTGAGTCGCCGTACTATGTTGGGTTGAGGAAGGCGGCGGAGGATCCATACGACCAGACGGGTAATCCGAATGGGATTATCCAGCTGGGTCTAG CGCAGAACAAGTTGACGATGGACTTGGTGAAGGAGTGGCTAGTTAAGAATGCTAAAGAAGCCATTGTTGGAGGAGGTGGAAGGAATGCGCATTTGAGTGT CAATGGCTTTGCTACTTACTTGCCTTGTCATGGACTGATGGATCTCAAAGTGGTTGTGTCAAGCTTCATTTCACATTGTACAGAGCAATCAGTATCTTTC AACCCTTCAAACATCGTACTAACAGCGGGGGAAACGGCTGCAATTGAGATACTAAGCTTCTGTCTAGCAGATTCCGGGAACGCATTCCTTGTTCCGACGC CATATTATCCCGGATTCGACAGGGATGTGAAATGGAGAACCGGAATCGAGATAATTCCAGTTCCTTGCCGCAGCGCTGACAACTTCGCTCTGAGCATAAC CGCGCTGGATCGAGCATTCCACCAGGCAAAGAAGCGCGGTCTCAGAGTCCGCGGAATAATAATCTCGAACCCTTTCAGTCCGGTTGGCAATCTGCTGACC CGAGAAACCCTCTACAGCCTTCTCGACTTCGCCAGCGAAAAGAATATCCACGTTGTCTCCAACGAGCTCTTTGTCGGAAGCAGCAGCGAGTTCGTGAGTG TAGCAGAACTCATAGATGAATCGAGCAAGGACAGAGTTCATGTGGTGTATGGCCTCTCTGAAGACATCTCCATTCCAGGCTTTCGAGTCGGAGTTATCTA CTCCTGTAACGAGACCGTCCTCTCTGCAGCTCGAGAGCTGGCACGTTTCTCGTCAGTTTCGTCCCCAACGCAGCGCATACTGATTTCGATGCTGTCGGAT TCCCAATTCGTTCGCCAGTTTGTGAAGGTCAGTAGAGAAAGGCTCCGAAACACGTACAGCACTTTTGCATCGGGACTGAAGAAGCTAGGGATTCAGTGTA TAAACAGCAATGGTGGATTCTTCTGCTGGGCGAATATGAGTGAGCTGATAAGCTCATACAGTGAGAAAGGAGAGCTTGAGCTTTGGGACAAATTATTGAA CACTGCTAAGCTCAATGTAACTCCTGGATCTTGCTGTCACTGCATCGAACCGGGATGGTTCAGATTCTGCTTTGCTACCTTGACAGAGGGTGACATCCCT GTCGTTATCGATCGAATACGTCGTGTTTCTGATTCATGTAAATCTCAAAGTTGA
AA sequence Show only first row Show all	>Lus10007021 pacid=23168954 polypeptide=Lus10007021 locus=Lus10007021.g ID=Lus10007021.BGIv1.0 annot-version=v1.0 MRVIIPLQGVVQGSGGVFLGSVIPCALFYFLQLYLRRNHGSSDPVEPEDRNSRNPDTADEPGPSGQLLRRTSSRNLLSPRTRAYVSNRAGMIAKTGGGGG GGCESPYYVGLRKAAEDPYDQTGNPNGIIQLGLAQNKLTMDLVKEWLVKNAKEAIVGGGGRNAHLSVNGFATYLPCHGLMDLKVVVSSFISHCTEQSVSF NPSNIVLTAGETAAIEILSFCLADSGNAFLVPTPYYPGFDRDVKWRTGIEIIPVPCRSADNFALSITALDRAFHQAKKRGLRVRGIIISNPFSPVGNLLT RETLYSLLDFASEKNIHVVSNELFVGSSSEFVSVAELIDESSKDRVHVVYGLSEDISIPGFRVGVIYSCNETVLSAARELARFSSVSSPTQRILISMLSD SQFVRQFVKVSRERLRNTYSTFASGLKKLGIQCINSNGGFFCWANMSELISSYSEKGELELWDKLLNTAKLNVTPGSCCHCIEPGWFRFCFATLTEGDIP VVIDRIRRVSDSCKSQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62960		ACS10	ACC synthase 10 (.1)		Lus10007021 [exp]	0	1
AT3G01660			S-adenosyl-L-methionine-depend...		Lus10022301 [exp]	1.4	0.8771
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10026887 [exp]	4.4	0.8875
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10022891 [exp]	6.5	0.8482
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10003421 [exp]	6.7	0.8628
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10041479 [exp]	8.7	0.8669
AT3G23400		FIB4	fibrillin 4, Plastid-lipid ass...		Lus10011803 [exp]	10.6	0.8453
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028852 [exp]	13.6	0.8083
AT2G24220		ATPUP5	purine permease 5 (.1.2)		Lus10036272 [exp]	13.7	0.8384
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029054 [exp]	15.0	0.8153
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10026322 [exp]	15.6	0.8700

Compare expression of checked genes

Lus10007021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.