Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22860 201 / 3e-60 Cell cycle regulated microtubule associated protein (.1.2) AT4G11990 192 / 1e-56 Cell cycle regulated microtubule associated protein (.1) AT5G07170 116 / 3e-29 Cell cycle regulated microtubule associated protein (.1) AT5G62240 92 / 9e-21 Cell cycle regulated microtubule associated protein (.1) AT1G03780 66 / 1e-11 AtTPX2, TPX2 targeting protein for XKLP2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006677 [exp] 503 / 4e-177 AT4G22860 345 / 5e-113 Cell cycle regulated microtubule associated protein (.1.2) Lus10031690 [exp] 103 / 2e-24 AT4G22860 117 / 2e-29 Cell cycle regulated microtubule associated protein (.1.2) Lus10031109 [exp] 101 / 1e-23 AT5G07170 124 / 6e-31 Cell cycle regulated microtubule associated protein (.1) Lus10018608 [exp] 62 / 2e-10 AT1G03780 741 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10039844 [exp] 60 / 1e-09 AT1G03780 689 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10017715 [exp] 55 / 7e-08 AT1G03780 687 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10033674 [exp] 55 / 8e-08 AT1G03780 718 / 0.0 targeting protein for XKLP2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117800 [exp] 277 / 4e-89 AT4G22860 377 / 8e-126 Cell cycle regulated microtubule associated protein (.1.2) Potri.001G114400 [exp] 255 / 3e-81 AT4G22860 353 / 4e-117 Cell cycle regulated microtubule associated protein (.1.2) Potri.012G130300 [exp] 153 / 1e-42 AT4G22860 164 / 2e-45 Cell cycle regulated microtubule associated protein (.1.2) Potri.007G138600 [exp] 66 / 1e-11 AT1G03780 672 / 0.0 targeting protein for XKLP2 (.1.2.3) Potri.017G013100 [exp] 60 / 2e-09 AT1G03780 667 / 0.0 targeting protein for XKLP2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12214 [flax] [poplar] TPX2_importin Cell cycle regulated microtubule associated protein
Representative CDS sequence Show only first row Show all	>Lus10007022 pacid=23168959 polypeptide=Lus10007022 locus=Lus10007022.g ID=Lus10007022.BGIv1.0 annot-version=v1.0 ATGGAGGAGGAAATGGAGGTGGATATGCTGTACTACGAGGCTCGGGAAGTGGATCCTGACTACGAGTTTGATGCTCCGATGTTCTTCGATTTCGTCAGGG AAGAGACGTTCGCGGAGGCGATTTTGGCTCAGCGGTGGTTCGACTCGGCGCCTAGTTATCCTCCGTCTCCTTTTGTGGCAAAGCTGGAGCTCAGAGAGGA AATCTTGTTAAAGAATATTAATACTTCTCCGAAACCTGAAGGCATTGAATATTTGGATGATGATGACGGCGGTGGTGATCTGGGCCCGGGACATGCTGCT GCCACGACGGTGGGAGATGGCCATAAAGGATTCATATTTTACAATCATTTGAAGGGTGATAAACTGAAAGCCAAGACGAACCAGTCAAAGCCTAGATCTC GAGGTTGCTCAACATTGATGAGACCAACAGCTAGCTTGTTGGCAAAGCAAACTCAGGCACCTCGTATTGGTGGCTCCAGGTTTCAAATGCTAACGGATCA GAAAGAAAAAAGCGTACATAATACTTCTATGGTTGAAGGTCAGGCTGCCAAAAGGCAGAAATTAGAGGGAGGGCACGTGCGCAAGGTTGGTGATGGAAAA CCACAGGCTGATTTCCTCCATAAAGCACCTGCGAAGCTTAGGTTAACCATTCCAAGAGAGCCCGACTTTGAGACGGATTACAGAGCACATAGAACAAGGC CTGTAAATAATACAACAGAACTTGAGCACACTACAGATCCTGTTCGAAGATTCAAAGCTCGCCCTTTAAACCGAAAAATTCTTGAGGCTCCTTCATTACC TCTCCCGACGAGAAGCGCTCCAAGGATGCCCGAATTTCAAATACTTTCCAGCAAAGGAGACATTGGTGTTTTCCGCAACAGCAAGCGACAAACCACAGTG CCTATGTCGCTGCATGCACAGAAAGGTAGGCCATCCGGTTTCGGTGGGAAGCCGATTCATCCAGGAAACAATGGATGCAACAGTGATGCCGGAAACCAGT ACAGCCTGAGGTATGCTGCTGCCACAAGAAAGGAGCTTGGACATCCGGTGAAGAGTAGCTGA
AA sequence Show only first row Show all	>Lus10007022 pacid=23168959 polypeptide=Lus10007022 locus=Lus10007022.g ID=Lus10007022.BGIv1.0 annot-version=v1.0 MEEEMEVDMLYYEAREVDPDYEFDAPMFFDFVREETFAEAILAQRWFDSAPSYPPSPFVAKLELREEILLKNINTSPKPEGIEYLDDDDGGGDLGPGHAA ATTVGDGHKGFIFYNHLKGDKLKAKTNQSKPRSRGCSTLMRPTASLLAKQTQAPRIGGSRFQMLTDQKEKSVHNTSMVEGQAAKRQKLEGGHVRKVGDGK PQADFLHKAPAKLRLTIPREPDFETDYRAHRTRPVNNTTELEHTTDPVRRFKARPLNRKILEAPSLPLPTRSAPRMPEFQILSSKGDIGVFRNSKRQTTV PMSLHAQKGRPSGFGGKPIHPGNNGCNSDAGNQYSLRYAAATRKELGHPVKSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22860			Cell cycle regulated microtubu...		Lus10007022 [exp]	0	1
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Lus10035331 [exp]	3.0	0.9259
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	5.6	0.9289
AT4G22860			Cell cycle regulated microtubu...		Lus10006677 [exp]	6.9	0.9278
AT5G01910			unknown protein		Lus10022734 [exp]	8.9	0.9179
AT3G27640			Transducin/WD40 repeat-like su...		Lus10032126 [exp]	11.0	0.9070
AT2G20980		MCM10	minichromosome maintenance 10 ...		Lus10019785 [exp]	12.4	0.8793
AT3G46320			Histone superfamily protein (....		Lus10019956 [exp]	14.3	0.9034
AT4G35880			Eukaryotic aspartyl protease f...		Lus10028410 [exp]	15.1	0.8777
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10023877 [exp]	15.7	0.9021
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10030045 [exp]	15.9	0.8814

Compare expression of checked genes

Lus10007022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.