Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12520 387 / 2e-135 ATCCS, CCS1 copper chaperone for SOD1 (.1.2.3) AT2G28190 65 / 5e-12 CZSOD2, CSD2 copper/zinc superoxide dismutase 2 (.1) AT1G08830 59 / 2e-10 CSD1 copper/zinc superoxide dismutase 1 (.1.2) AT5G18100 55 / 5e-09 CSD3 copper/zinc superoxide dismutase 3 (.1.2) AT3G56891 52 / 4e-08 Heavy metal transport/detoxification superfamily protein (.1) AT1G06330 50 / 3e-07 Heavy metal transport/detoxification superfamily protein (.1) AT3G02960 49 / 2e-06 Heavy metal transport/detoxification superfamily protein (.1) AT2G36950 45 / 5e-05 Heavy metal transport/detoxification superfamily protein (.1) AT4G08570 43 / 5e-05 Heavy metal transport/detoxification superfamily protein (.1) AT4G10465 43 / 7e-05 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006686 [exp] 546 / 0 AT1G12520 393 / 6e-138 copper chaperone for SOD1 (.1.2.3) Lus10004139 [exp] 62 / 1e-11 AT1G08830 253 / 4e-88 copper/zinc superoxide dismutase 1 (.1.2) Lus10001719 [exp] 64 / 2e-11 AT1G08830 250 / 6e-85 copper/zinc superoxide dismutase 1 (.1.2) Lus10016155 [exp] 60 / 2e-10 AT2G28190 308 / 1e-107 copper/zinc superoxide dismutase 2 (.1) Lus10010651 [exp] 60 / 9e-10 AT5G18100 228 / 9e-75 copper/zinc superoxide dismutase 3 (.1.2) Lus10021410 [exp] 58 / 1e-09 AT2G28190 306 / 5e-107 copper/zinc superoxide dismutase 2 (.1) Lus10013911 [exp] 50 / 3e-07 AT1G06330 103 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1) Lus10020704 [exp] 49 / 6e-07 AT1G06330 173 / 3e-56 Heavy metal transport/detoxification superfamily protein (.1) Lus10013615 [exp] 49 / 2e-06 AT5G18100 209 / 7e-68 copper/zinc superoxide dismutase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G118400 [exp] 447 / 4e-159 AT1G12520 393 / 8e-138 copper chaperone for SOD1 (.1.2.3) Potri.001G113800 [exp] 421 / 1e-148 AT1G12520 377 / 2e-131 copper chaperone for SOD1 (.1.2.3) Potri.005G044400 [exp] 64 / 3e-12 AT1G08830 266 / 5e-93 copper/zinc superoxide dismutase 1 (.1.2) Potri.004G216700 [exp] 63 / 2e-11 AT2G28190 267 / 2e-91 copper/zinc superoxide dismutase 2 (.1) Potri.013G031100 [exp] 59 / 2e-10 AT1G08830 261 / 6e-91 copper/zinc superoxide dismutase 1 (.1.2) Potri.009G005100 [exp] 59 / 4e-10 AT2G28190 252 / 2e-85 copper/zinc superoxide dismutase 2 (.1) Potri.019G106500 [exp] 54 / 7e-09 AT1G06330 217 / 1e-73 Heavy metal transport/detoxification superfamily protein (.1) Potri.011G065600 [exp] 54 / 8e-09 AT1G06330 159 / 7e-51 Heavy metal transport/detoxification superfamily protein (.1) Potri.019G107500 [exp] 52 / 4e-08 AT1G06330 213 / 5e-72 Heavy metal transport/detoxification superfamily protein (.1) Potri.013G056900 [exp] 50 / 1e-07 AT5G18100 239 / 4e-82 copper/zinc superoxide dismutase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00080 [flax] [poplar] Sod_Cu Copper/zinc superoxide dismutase (SODC) PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10007031 pacid=23168941 polypeptide=Lus10007031 locus=Lus10007031.g ID=Lus10007031.BGIv1.0 annot-version=v1.0 ATGGCATTTCTGCGTACAGTGGCTGCAACCAAGACAACAGCCATTGTAGCAGCCTCTGCTCTTCCTCCTGCTGCTGCTTACTCTCTCTTCACTCACCCAA ATTCCAATTCCCAAAACCCATCTCTTCTTTCGATCTCTTTCTCTTCTTCTTCCCCAGCTCGTTTTGGCCTTGTAACCCGCCTGACTCAGCCACTCTCAGC AGTCGCCATGGACGCGCCCACCTCCGATCGCAATCAACCCATCACCCAGGAAAATGGCGACTTGCCCGATCTTCTTACGGAATTCATGGTGGATATGAGC TGTGAAGGGTGTGTGAAGTCGGTGAAGACTAAGCTTCAAGTTGTGAAAGGTGTGAAGAATGTGGAGGTGGATTTGGGAAATCAAGTGGTTAGAGTTCTTG GCTCTTCATCTGTGAAGGAGATGACTGAAGCTCTGAAGCAAACCGGTCGAAATGCCCGGTTGATCGGCCAGGGTGTACCTGAAGACTTTTTGGTGTCTGC TGCTGTTGCCGAGTTCAAGGGGCCAGATATCTTCGGCGTGGTTCGCTTTGCACAAGTGAACATGGAGCTAGCAAGGATCGAAGCCAATTTCAGCGGACTG TCGCCTGGGAAACACGGCTGGTCCATCAACGAGTTCGGTGACCTGACGAAAGGTGCAGCCAGCACAGGAAAGGTGTTTAATCCAACCAGTGACAAAACCG AGAACGAGCCAGTTGGTGACCTGAGAACATTAGAAGTCGACGAGAAGGGTGAAGCCTTCTTCTCGGGTGTCAAAGAGAAGCTAAGAGTCGTCGATCTGAT TGGCAGAGCAGTCGCAGTTTACGAAACTGAAGACAGATCAGATGCCGGTTTGACAGCAGCCGTTATTGCTAGAAGCGCGGGCATCGGAGAGAACTACAAG AAGCTATGCACTTGCGACGGAACAACCATTTGGGAATCAAGTGATAGAGATTTCGTTGCAAGCAAAGTCTAA
AA sequence Show only first row Show all	>Lus10007031 pacid=23168941 polypeptide=Lus10007031 locus=Lus10007031.g ID=Lus10007031.BGIv1.0 annot-version=v1.0 MAFLRTVAATKTTAIVAASALPPAAAYSLFTHPNSNSQNPSLLSISFSSSSPARFGLVTRLTQPLSAVAMDAPTSDRNQPITQENGDLPDLLTEFMVDMS CEGCVKSVKTKLQVVKGVKNVEVDLGNQVVRVLGSSSVKEMTEALKQTGRNARLIGQGVPEDFLVSAAVAEFKGPDIFGVVRFAQVNMELARIEANFSGL SPGKHGWSINEFGDLTKGAASTGKVFNPTSDKTENEPVGDLRTLEVDEKGEAFFSGVKEKLRVVDLIGRAVAVYETEDRSDAGLTAAVIARSAGIGENYK KLCTCDGTTIWESSDRDFVASKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Lus10007031 [exp]	0	1
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Lus10006686 [exp]	1.4	0.9382
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10004574 [exp]	4.2	0.8840
AT3G11810			unknown protein		Lus10037134 [exp]	5.1	0.9062
AT5G23590			DNAJ heat shock N-terminal dom...		Lus10027828 [exp]	6.7	0.9044
AT1G22540			Major facilitator superfamily ...		Lus10016932 [exp]	9.4	0.8872
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10004575 [exp]	10.1	0.8566
AT2G35330			RING/U-box superfamily protein...		Lus10004557 [exp]	12.8	0.8696
AT4G14440		HCD1, ATECI3	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10041154 [exp]	18.1	0.8822
AT2G32090			Lactoylglutathione lyase / gly...		Lus10010552 [exp]	20.5	0.8841
AT3G52220			unknown protein		Lus10039101 [exp]	32.5	0.8815

Compare expression of checked genes

Lus10007031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.