Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58180 465 / 3e-166 ARM repeat superfamily protein (.1) AT3G62530 127 / 5e-35 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006688 [exp] 612 / 0 AT3G58180 484 / 5e-174 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G041400 [exp] 485 / 3e-174 AT3G58180 497 / 3e-179 ARM repeat superfamily protein (.1) Potri.005G221700 [exp] 472 / 5e-169 AT3G58180 458 / 1e-163 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF03130 [flax] [poplar] HEAT_PBS PBS lyase HEAT-like repeat
Representative CDS sequence Show only first row Show all	>Lus10007032 pacid=23168971 polypeptide=Lus10007032 locus=Lus10007032.g ID=Lus10007032.BGIv1.0 annot-version=v1.0 ATGGGTTCTCTGGGCGATACAACCGTCAATGGATCTTCGATAACCATGGAGCAGTTTCTGTGTGAACGATTAGTCGACTCTTCCCAGCCGATATCTGAAA GGTTCCGTGTCCTGTTTTCTCTTCGCAATCTCAAAGGCTCTGGACCTCGCACTGCTTTGATTCAAGCAACGAGGGACTCCTCGAATCTATTGGCGCACGA GGCTGCATTTGCATTAGGCCAAATGCAGGATTCCGAGGCTATCCCAGCTTTGGAGGCGGTTCTAAACGATCTTTCTTTGCATCCCATCGTTCGACATGAG GCTGCAGAAGCTCTTGGAGCAATTGGTTTAAAGAGTAATGTGCCACTTCTGGAGAGAAGTTTGGCTGTAGATCCAGCTCAGGAAGTTAGAGAAACTTGTG AGCTGGCTCTGAACCGGATTAAGGAGATGAATACTTCAAATGGTGATTATCAATCACCCGCAATGGATAAGTCACCATTTTTATCAGTTGATCCAGCTGG TGCAGCATCATCGTGTTCTTCTGTTGATGAGCTAAGGGAAGTTCTTCTCGATGAAGAAAAACACATGTATGAACGATATGCTGCTCTTTTCGCCCTACGT AACAACAGTGGGGATGAAGCTGTTACTGCAATAGTAGATTCGTTGCAGTCTAAGAGTGCCCTGCTTAAGCACGAGGTTGCATACGTTTTGGGCCAGTTAC AAAACAAAGCTGCATCGGCTGCACTTAGTTCAGTACTTAGAGATGTAAATGAACACCCAATGGTTCGGCATGAAGCTGCCGAAGCTCTTGGCTCTATTGC TGATGATAAAAGCATTGCACTTCTGGAGGAATTCTCCAAGGACCCCGAGCCTATTGTATCAGAGAGCTGTGAAGTTGCCCTAAGCATGCTAGAATACGAA AGATCCGGGAAATCCTTCGAGTACCTCTTCATGCAAGATCCATTAGCACAGGCGTAG
AA sequence Show only first row Show all	>Lus10007032 pacid=23168971 polypeptide=Lus10007032 locus=Lus10007032.g ID=Lus10007032.BGIv1.0 annot-version=v1.0 MGSLGDTTVNGSSITMEQFLCERLVDSSQPISERFRVLFSLRNLKGSGPRTALIQATRDSSNLLAHEAAFALGQMQDSEAIPALEAVLNDLSLHPIVRHE AAEALGAIGLKSNVPLLERSLAVDPAQEVRETCELALNRIKEMNTSNGDYQSPAMDKSPFLSVDPAGAASSCSSVDELREVLLDEEKHMYERYAALFALR NNSGDEAVTAIVDSLQSKSALLKHEVAYVLGQLQNKAASAALSSVLRDVNEHPMVRHEAAEALGSIADDKSIALLEEFSKDPEPIVSESCEVALSMLEYE RSGKSFEYLFMQDPLAQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58180			ARM repeat superfamily protein...		Lus10007032 [exp]	0	1
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Lus10000904 [exp]	4.6	0.9109
AT5G16870			Peptidyl-tRNA hydrolase II (PT...		Lus10009246 [exp]	7.7	0.9075
AT1G04850			ubiquitin-associated (UBA)/TS-...		Lus10037827 [exp]	9.5	0.9093
AT2G41810			Protein of unknown function, D...		Lus10031067 [exp]	10.1	0.9046
AT3G58180			ARM repeat superfamily protein...		Lus10006688 [exp]	11.8	0.9081
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10015106 [exp]	13.8	0.9106
AT1G06890			nodulin MtN21 /EamA-like trans...		Lus10042217 [exp]	20.0	0.8936
AT5G48020			2-oxoglutarate (2OG) and Fe(II...		Lus10037482 [exp]	20.0	0.9045
AT1G80950			Phospholipid/glycerol acyltran...		Lus10032707 [exp]	22.6	0.8803
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10022019 [exp]	26.1	0.8989

Compare expression of checked genes

Lus10007032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.