Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 122 / 1e-31 O-methyltransferase family protein (.1) AT4G35150 112 / 4e-28 O-methyltransferase family protein (.1) AT5G54160 98 / 9e-23 ATOMT1 O-methyltransferase 1 (.1) AT1G21130 93 / 4e-21 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G21100 93 / 6e-21 IGMT1 indole glucosinolate O-methyltransferase 1, O-methyltransferase family protein (.1) AT1G21120 88 / 2e-19 IGMT2 indole glucosinolate O-methyltransferase 2, O-methyltransferase family protein (.1) AT1G21110 87 / 4e-19 IGMT3 indole glucosinolate O-methyltransferase 3, O-methyltransferase family protein (.1) AT1G51990 86 / 2e-18 O-methyltransferase family protein (.1.2) AT1G77520 85 / 3e-18 O-methyltransferase family protein (.1) AT3G53140 80 / 1e-16 O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006692 [exp] 624 / 0 AT4G35160 152 / 2e-42 O-methyltransferase family protein (.1) Lus10006691 [exp] 479 / 9e-171 AT4G35150 150 / 1e-41 O-methyltransferase family protein (.1) Lus10038331 [exp] 347 / 4e-116 AT4G35160 197 / 8e-58 O-methyltransferase family protein (.1) Lus10032304 [exp] 330 / 6e-112 AT4G35160 170 / 2e-49 O-methyltransferase family protein (.1) Lus10018628 [exp] 260 / 1e-84 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10033656 [exp] 239 / 3e-76 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10018629 [exp] 236 / 2e-75 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10017699 [exp] 235 / 7e-75 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10017691 [exp] 213 / 5e-66 AT4G35160 194 / 2e-58 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093100 [exp] 261 / 4e-85 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 260 / 7e-85 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 259 / 2e-84 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 254 / 3e-82 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 248 / 6e-80 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1) Potri.013G122000 [exp] 245 / 7e-79 AT4G35160 174 / 6e-51 O-methyltransferase family protein (.1) Potri.013G121900 [exp] 243 / 5e-78 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 242 / 1e-77 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 220 / 3e-69 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1) Potri.011G059600 [exp] 216 / 3e-67 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10007035 pacid=23168964 polypeptide=Lus10007035 locus=Lus10007035.g ID=Lus10007035.BGIv1.0 annot-version=v1.0 ATGGATGCAACCACTGCGATGGAGCTACTCGATGCCCAACCTCGAGTTTGGGATCACTTCCTGGGCTACATCAACTCGATGACCCTCCAATGCGCACTCG AGCTAGAGATCGCTGATGTGATCCACAGCCACGGCCGGCCCATGCCATTGGCCGAGCTGGCCGCGGCTCTAAAAATCTCTTCAGATAAGGCCCCGTTCCT CTCGCGCCTCATGCGCATGCTGGTGCATCTGGGCTACTTCACACAGCAGAAGGGAGGAGAAGGGTGTCACTACTACTGCGTGGCACCCCTCTCCCGCCTG TTGTTGAAGGAGAACCCATATAACACCAGGTCGCTCACCTTTTGCTCGGTCCACCAGCATCTGGTGGACCCCTGGCGTCAGATGAGCGCCTGGTTACAAA CCACCCGTAAGGATGGAAAAGATGCCCCGAATGCTTTTGCTTTTGCCCACGAGGGCAAGAAGGTGTACGAGGTTTGCTCCGAGGACCCGCCGTTCAGCCG GCTGTTTTTCGGAGGGGGGTTGAGCTCGCTTGTCGATGTCGGGGGCGGTACGGGGAACACATCTAAGGTCATTGCTGAGGCCTTCCCCGACATGCAGTGC ACTGTGTTTGATCTCCCTCATGTGGTCTCTGGACTGAAACAAACCCATCACAATCTTCACTACGAAAGTGGCAACATGTTTACCGACGATATTCCTCACG CTGATGCAGTGCTCTTCAAGTGGGTGCTATGTGACTGGCCGGACGAACCGGTCCTGAAAATGCTGAAGCAGTGCAAGAAAGCGTTGACCAAGAACGGAGT GAAGGGGAAGCTGATGATCGCAGACCACGTGCTGGGGCACGAGAGTTGCAACGACAGCAGCTCGATGGGAACATCTCTGGTGCTCGACATGTTGTTCATG TCGTTTCTCGAAGGTTCTCTGAGGACCGAGGAGCAGTGGGCGAAGCTCTTCTCCGATGCCGGCTTTACCAGCTACACTATAACTCCCGTTGGTGGCCTAA GAGTCCTCATCCAAGTCTACCCTTAA
AA sequence Show only first row Show all	>Lus10007035 pacid=23168964 polypeptide=Lus10007035 locus=Lus10007035.g ID=Lus10007035.BGIv1.0 annot-version=v1.0 MDATTAMELLDAQPRVWDHFLGYINSMTLQCALELEIADVIHSHGRPMPLAELAAALKISSDKAPFLSRLMRMLVHLGYFTQQKGGEGCHYYCVAPLSRL LLKENPYNTRSLTFCSVHQHLVDPWRQMSAWLQTTRKDGKDAPNAFAFAHEGKKVYEVCSEDPPFSRLFFGGGLSSLVDVGGGTGNTSKVIAEAFPDMQC TVFDLPHVVSGLKQTHHNLHYESGNMFTDDIPHADAVLFKWVLCDWPDEPVLKMLKQCKKALTKNGVKGKLMIADHVLGHESCNDSSSMGTSLVLDMLFM SFLEGSLRTEEQWAKLFSDAGFTSYTITPVGGLRVLIQVYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35160			O-methyltransferase family pro...		Lus10007035 [exp]	0	1
					Lus10003448 [exp]	2.0	0.8367
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10034334 [exp]	4.6	0.7955
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10014241 [exp]	4.6	0.8197
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10003265 [exp]	10.0	0.7968
AT3G07840			Pectin lyase-like superfamily ...		Lus10009605 [exp]	14.1	0.7368
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001042 [exp]	17.6	0.7423
AT2G40170		GEA6, ATEM6	LATE EMBRYOGENESIS ABUNDANT 6,...		Lus10037844 [exp]	21.9	0.7624
AT1G17800		AtENODL22	early nodulin-like protein 22 ...		Lus10020984 [exp]	22.6	0.7605
					Lus10038428 [exp]	24.5	0.8072
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10006183 [exp]	25.7	0.7308

Compare expression of checked genes

Lus10007035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.