Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 496 / 1e-165 ARA12 Subtilase family protein (.1) AT1G04110 491 / 4e-163 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G05920 479 / 5e-159 Subtilase family protein (.1) AT4G34980 469 / 5e-155 SLP2 subtilisin-like serine protease 2 (.1) AT3G14240 462 / 6e-152 Subtilase family protein (.1) AT3G14067 461 / 1e-151 Subtilase family protein (.1) AT1G01900 458 / 1e-150 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT5G51750 430 / 8e-140 ATSBT1.3 subtilase 1.3 (.1) AT2G04160 426 / 3e-138 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 410 / 7e-132 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006693 [exp] 1179 / 0 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10028893 [exp] 991 / 0 AT1G04110 580 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10028895 [exp] 786 / 0 AT5G67360 566 / 0.0 Subtilase family protein (.1) Lus10008919 [exp] 777 / 0 AT5G67360 561 / 0.0 Subtilase family protein (.1) Lus10029570 [exp] 743 / 0 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10006689 [exp] 742 / 0 AT2G05920 563 / 0.0 Subtilase family protein (.1) Lus10029575 [exp] 741 / 0 AT5G67360 552 / 0.0 Subtilase family protein (.1) Lus10007033 [exp] 734 / 0 AT5G67360 551 / 0.0 Subtilase family protein (.1) Lus10006303 [exp] 731 / 0 AT5G67360 563 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G118700 [exp] 788 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.019G006570 [exp] 773 / 0 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G113700 [exp] 762 / 0 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 745 / 0 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 745 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G074600 [exp] 547 / 0 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.004G173900 [exp] 489 / 2e-162 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.009G133400 [exp] 487 / 8e-162 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1) Potri.006G141200 [exp] 484 / 6e-161 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.002G256300 [exp] 476 / 1e-157 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10007036 pacid=23168930 polypeptide=Lus10007036 locus=Lus10007036.g ID=Lus10007036.BGIv1.0 annot-version=v1.0 ATGCTTCTTGTTTCCCTTATTATCACCTTCACTTCTTTCCTATTCTGTCTCTCCCAAACAGTCCCTAATGAACAAACCAACTTACAAACCTATCTAGTCT TTGTCGAAAAACCTGAAGGGACTGTAAATTCCTTGGAAGAACAATCAGAAGATCTTGACAAATACTACCACCAATTCCTCCCGACAACCACCACCGCTAG CTCCGAAGATTCGCCCCGAATGGTCCACTCTTACCACCACGTGGCGACAGGGTTCGCAGCGAGACTCACACGGGCCGAACTCGAGTTGATGAAGGAGAAA CGAGGGTTCCTGTCAGCGCGTCCCGAGAGGATTCTGAATCTTCACACAACTTACACTCCCAAGTTCCTTGGTTTGCAGCGGAATTCGGGGTTGTGGAACG GTTCGGGGTATGGGAAAGGAGTGGTGGTTGGGGTTTTTGATACCGGAGTGACGGCTGATCATCCTTCGTTTAGTGACGAAGGGATGCCTCCGCCGCCTTC GAAATGGAGAGGGAGATGCGAGCCGAAGGAGGTTTGTAATAATAAGGTTATTGGTGCAAGAAATCTTGCGGCGAAAGGGGAGTCCGTCGAAGACGAGGAA GGCCATGGGAGTCATACGGCTAGCACAGCTGCTGGAAGTGCAGTTTCAGGTGCAAATGCAATGGGTCAAGGGTTCGGAACTGCAGTCGGGATGTCACCGA TGGCTCACTTAGCCATCTACAAAGTGTGCAGCGGTCAAAAGGGTTGTACGGACACTGCCATAATGGCGGCATTCGATGCTGCAGTTGAGGACGGCGTCGA CGTCCTCTCTATCTCGCTCGGTGGCAACTCCGCTCCGTTTTTCAACGACGGAATCGCCATAGGCGCATTCGGTGCAATGAAGAAGGGAATATTCGTAAGC TGTTCCGCAGGGAATGAGGGTCCCGCAGCTAGCTCGTTGTCAAACGAAGCGCCGTGGATTCTAACGGTCGGAGCTGGAACTGTTGATAGACAAATAAAAT CAACGGTTCTGCTGGGAAACGGAAAAAGGTTTGACGGTCAAACCCTTTTCCAACGGAAAGATTCTGCTTCTTCGAAAATGCTGCCGCTTGTGTACGCAGG AGCCTCTCCTGATCACAACTCATCGGCCGTGTATTGCGCTCCCGGTTCGCTTTCCGAGGTTGATGTTAAAGGCAAAGTGGTCGTGTGCGAGTCGGGAGGC AAAATCAAAAGGATTGACAAAGGTATGGAAGTCAAGAACAACGGTGGATCCGGGATGATTCTGATCAACAGCAAAGCTGCTGGGTTCACGACTTTAGCCG ATGCACACAAGATTCCGGCTTCGCATGTTAGTTACGAGGCCGGAATGTCGATTAAAGCATATATCAACTCGACAACGTCTCCGACTGCAACGATAGCGTT CAAAGGGACGGTGTTTAGTGACCAAGTCGAGGCTCCTCAAGTCGCTTCATTTTCGTCACGAGGGCCTAGCAAGGCGAGCCCGGGGATCATGAAGCCGGAT TTGATCGGCCCCGGAGTTAGCACTTTGGCGGCTTGGCCAACTCATGAGGAAGAGGACGACATCATGAGCGGTGGTGGTTCTGATCAGGCGAAATTCAACA TGATTTCCGGGACTTCGATGTCGTGTCCACACCTTAGTGGCATTGCTGCTCTAATTAGAGGTTCTCACCCGGATTGGTCGCCAGCCGCCATAAAATCGGC AATGATGACTACAGCCCACCTCACTCAAAAGGGCAGCAATAACAAACCCATCTCCGACGAGCAACGACTCCCGGCCGACTTATTGGACATGGGATCGGGC CACGTGAATCCAGCCGGAGCCAACGACCCCGGCCTAGTGTACGACATCCAGCCAGATGATTACATTCCTTACCTATGCGGCTTGGGCTACAACGACGCGC AGGTGACCACAATCGTGCAGCAGAAGGTGCAATGCTCGTTGAACCAATCGATACCGGAAGCTCAGCTGAATTACCCGTCGTTCGTCTTGCGATTGGAGCC CGGGGAGCCACAGACGTACACTAGGACCGTGACAAACGTTGGGAAAGCGAACTCGGTGTACAAAGTTGAGGTGCGGGGATCAGAAGAAGGTGTAGTAGAT GTGGAAGTGAGTCCTCGGGAGATTGGTTTCAGTCGATTGAACGAGAAGGCGAAGTATTCGGTCACGTTCACGTTTCGAAATGGGATGGTGACGGGTGAGA AGTTCGTTCAAGGGAGCTTGATCTGGGTGGCGGATGGGTACAGTGTGAGGAGTCCATTTGGTATCATATTGAAGTGA
AA sequence Show only first row Show all	>Lus10007036 pacid=23168930 polypeptide=Lus10007036 locus=Lus10007036.g ID=Lus10007036.BGIv1.0 annot-version=v1.0 MLLVSLIITFTSFLFCLSQTVPNEQTNLQTYLVFVEKPEGTVNSLEEQSEDLDKYYHQFLPTTTTASSEDSPRMVHSYHHVATGFAARLTRAELELMKEK RGFLSARPERILNLHTTYTPKFLGLQRNSGLWNGSGYGKGVVVGVFDTGVTADHPSFSDEGMPPPPSKWRGRCEPKEVCNNKVIGARNLAAKGESVEDEE GHGSHTASTAAGSAVSGANAMGQGFGTAVGMSPMAHLAIYKVCSGQKGCTDTAIMAAFDAAVEDGVDVLSISLGGNSAPFFNDGIAIGAFGAMKKGIFVS CSAGNEGPAASSLSNEAPWILTVGAGTVDRQIKSTVLLGNGKRFDGQTLFQRKDSASSKMLPLVYAGASPDHNSSAVYCAPGSLSEVDVKGKVVVCESGG KIKRIDKGMEVKNNGGSGMILINSKAAGFTTLADAHKIPASHVSYEAGMSIKAYINSTTSPTATIAFKGTVFSDQVEAPQVASFSSRGPSKASPGIMKPD LIGPGVSTLAAWPTHEEEDDIMSGGGSDQAKFNMISGTSMSCPHLSGIAALIRGSHPDWSPAAIKSAMMTTAHLTQKGSNNKPISDEQRLPADLLDMGSG HVNPAGANDPGLVYDIQPDDYIPYLCGLGYNDAQVTTIVQQKVQCSLNQSIPEAQLNYPSFVLRLEPGEPQTYTRTVTNVGKANSVYKVEVRGSEEGVVD VEVSPREIGFSRLNEKAKYSVTFTFRNGMVTGEKFVQGSLIWVADGYSVRSPFGIILK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10007036 [exp]	0	1

Compare expression of checked genes

Lus10007036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.