Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13990 520 / 0 Exostosin family protein (.1) AT2G20370 431 / 4e-146 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT2G29040 423 / 6e-142 Exostosin family protein (.1) AT2G32750 416 / 8e-142 Exostosin family protein (.1) AT2G32740 403 / 2e-137 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1) AT2G31990 380 / 4e-128 Exostosin family protein (.1) AT5G41250 305 / 9e-98 Exostosin family protein (.1) AT5G62220 289 / 4e-92 ATGT18 glycosyltransferase 18 (.1) AT1G63450 292 / 7e-92 RHS8 root hair specific 8 (.1) AT1G68470 280 / 2e-89 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006694 [exp] 796 / 0 AT4G13990 617 / 0.0 Exostosin family protein (.1) Lus10001578 [exp] 451 / 4e-154 AT2G29040 566 / 0.0 Exostosin family protein (.1) Lus10004967 [exp] 449 / 1e-153 AT2G29040 573 / 0.0 Exostosin family protein (.1) Lus10016532 [exp] 446 / 4e-153 AT2G29040 546 / 0.0 Exostosin family protein (.1) Lus10022862 [exp] 435 / 9e-148 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10024961 [exp] 434 / 2e-147 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10010677 [exp] 425 / 3e-145 AT2G32750 497 / 7e-173 Exostosin family protein (.1) Lus10007426 [exp] 424 / 6e-145 AT2G32750 505 / 5e-176 Exostosin family protein (.1) Lus10001028 [exp] 416 / 1e-141 AT4G13990 499 / 1e-173 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G321000 [exp] 585 / 0 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.009G032500 [exp] 466 / 3e-159 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.014G147800 [exp] 452 / 1e-155 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 441 / 3e-150 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.001G381900 [exp] 289 / 1e-92 AT1G68470 528 / 0.0 Exostosin family protein (.1) Potri.001G382200 [exp] 286 / 1e-91 AT1G68470 530 / 0.0 Exostosin family protein (.1) Potri.001G105300 [exp] 284 / 1e-89 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.012G130700 [exp] 278 / 4e-88 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.015G132600 [exp] 267 / 7e-84 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.001G120800 [exp] 256 / 2e-80 AT4G22580 593 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10007037 pacid=23168935 polypeptide=Lus10007037 locus=Lus10007037.g ID=Lus10007037.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAACCCTCGTTCTTCCCTTCCAAATCCCGCAACATTCAGCTTTGGTTAGTGTGTCTCTCCTCCTTTCTACTGTGTCTCCTCTTGTTCTGCT TTGATTACTCGGCTTTACTCGGTTTCGGGAATGGCGGCTTATTAGATGAACACTCGATGAATCCTTCTGTAGCTGGTAATCTCACTGATTCCATCTCCAC ACTCATGTATTTGGACAATCATGATCTCACCGACTCTTGTTCGGGGAAATACGTATACATTCAGGATCTTCCAGTCCGATTCAACCAAGAATTGCTTGAC CATTGTGAATCAATCACTCCAGGGAGTGAACGGAACATGTGTCCTTACTTGCTTAATCACGGATTCGGTCAGTCTATTCAAGATTCATCTAAGATTCTGT CCAATACTAGTTGGTACTTGACGAATCAGTTCATGCTGGAGGTGATTTTCCACAGTAGGATGAAGAACTACAGTTGCTTAACCAACGATTCCTCACTTGC TTCTGCTGTTTACGTCCCGTTTTATGCCGGTCTCGACATCAGCAGATATCTATGGGGGTATGGAGCCTCCGCGAGAGACCGATCCGGGTTCGATCTCGTG AAATTTCTCAGTGATAAACCCGAGTGGAGCAGGATGTACGGAAGGGACCATTTCATGGTGGCCGGAAGGATTTCGTGGGATTTCAGGAGGCGAACGGATA ACGAGTCGGACTGGGGGAGCAAGCTTAGGTTCATGCCGGAATCGAAAAACATGTCGATGTTGGCGATCGAGTCGAGTTCGTGGAACAACGACTATGCAAT CCCGTACCCTACTTGTTTCCATCCTTCGAATCAAAAGGATATTTCGGAATGGCAGGAACAGTTAAGAAGGAAGGAAAGGCAATACTTGTTCTCTTTCGCC GGAGCTCCAAGGCCGGACCTTGACAACTCGATTCGTGGCAGGATTATGGAGGAATGCCAAGCTTCGAAAAACTCGTGCAAGTTGCTGGAATGTACTTATG CGGAAAAGGGCGCAATTACATGTGACAATCCCGTGAATGTGATGAAGGTGTTCCAGGATTCGGTTTTTTGTTTGCAGCCTGTGGGGGATTCGTACACTAG GCGATCGACTTTCGATGCGATCCTTGCAGGGTGCATTCCGGTGTTCTTTCACCCGGGAACGGCTTACGCACAGTACAAGTGGCATTTGCCGAAGGATTAT GGCAGATACTCGGTGTTCCTTCCTGTGAAGGATGTTAAAGATTGGAAAGCTGGTTTGGTCAACCGGATGCTGCTTGGAATACCCGAGGACCGGGTGGCGG CCGCTGCTTGGAATACCCGAGGACCGGGTGGCGGCCATGAGGGAGGAGGTGATAGGGTTGATTCCGAGGGTGATATATGCAGATTCCGGTAA
AA sequence Show only first row Show all	>Lus10007037 pacid=23168935 polypeptide=Lus10007037 locus=Lus10007037.g ID=Lus10007037.BGIv1.0 annot-version=v1.0 MGKKPSFFPSKSRNIQLWLVCLSSFLLCLLLFCFDYSALLGFGNGGLLDEHSMNPSVAGNLTDSISTLMYLDNHDLTDSCSGKYVYIQDLPVRFNQELLD HCESITPGSERNMCPYLLNHGFGQSIQDSSKILSNTSWYLTNQFMLEVIFHSRMKNYSCLTNDSSLASAVYVPFYAGLDISRYLWGYGASARDRSGFDLV KFLSDKPEWSRMYGRDHFMVAGRISWDFRRRTDNESDWGSKLRFMPESKNMSMLAIESSSWNNDYAIPYPTCFHPSNQKDISEWQEQLRRKERQYLFSFA GAPRPDLDNSIRGRIMEECQASKNSCKLLECTYAEKGAITCDNPVNVMKVFQDSVFCLQPVGDSYTRRSTFDAILAGCIPVFFHPGTAYAQYKWHLPKDY GRYSVFLPVKDVKDWKAGLVNRMLLGIPEDRVAAAAWNTRGPGGGHEGGGDRVDSEGDICRFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13990			Exostosin family protein (.1)		Lus10007037 [exp]	0	1
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Lus10039064 [exp]	1.0	0.9105
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Lus10030705 [exp]	2.0	0.8864
AT1G76400			Ribophorin I (.1)		Lus10016038 [exp]	3.9	0.8780
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Lus10013191 [exp]	4.0	0.8736
AT3G58610			ketol-acid reductoisomerase (....		Lus10022849 [exp]	6.5	0.8399
AT3G25580			Thioredoxin superfamily protei...		Lus10013889 [exp]	10.4	0.8415
AT4G01220		MGP4	male gametophyte defective 4, ...		Lus10008735 [exp]	10.8	0.8036
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10006012 [exp]	12.0	0.8309
AT1G01970			Tetratricopeptide repeat (TPR)...		Lus10015864 [exp]	12.5	0.7937
AT2G16800			high-affinity nickel-transport...		Lus10019792 [exp]	13.0	0.8343

Compare expression of checked genes

Lus10007037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.