Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 80 / 3e-16 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G23880 64 / 4e-11 F-box and associated interaction domains-containing protein (.1) AT3G06240 62 / 2e-10 F-box family protein (.1) AT3G52320 59 / 2e-09 F-box and associated interaction domains-containing protein (.1) AT4G22390 59 / 2e-09 F-box associated ubiquitination effector family protein (.1) AT1G11270 57 / 5e-09 F-box and associated interaction domains-containing protein (.1.2.3) AT2G02030 56 / 2e-08 F-box family protein (.1) AT4G21240 56 / 3e-08 F-box and associated interaction domains-containing protein (.1) AT3G16210 55 / 4e-08 F-box family protein (.1) AT3G17490 55 / 4e-08 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006697 [exp] 417 / 2e-144 AT4G12560 80 / 4e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10011015 [exp] 323 / 2e-107 AT3G06240 94 / 7e-21 F-box family protein (.1) Lus10024389 [exp] 278 / 5e-91 AT4G12560 62 / 1e-10 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10006687 [exp] 273 / 2e-89 AT4G12560 81 / 5e-17 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10032343 [exp] 98 / 1e-22 AT1G07700 218 / 9e-71 Thioredoxin superfamily protein (.1.2.3) Lus10038541 [exp] 82 / 7e-19 AT3G52320 45 / 2e-06 F-box and associated interaction domains-containing protein (.1) Lus10008871 [exp] 79 / 8e-16 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10023263 [exp] 67 / 7e-13 AT3G23880 49 / 6e-07 F-box and associated interaction domains-containing protein (.1) Lus10023238 [exp] 69 / 1e-12 AT3G23880 126 / 6e-33 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G013500 [exp] 96 / 9e-22 AT4G10190 70 / 4e-13 F-box and associated interaction domains-containing protein (.1) Potri.006G013000 [exp] 85 / 7e-18 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G014300 [exp] 82 / 6e-17 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.015G013800 [exp] 81 / 2e-16 AT4G12560 105 / 7e-25 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058900 [exp] 79 / 5e-16 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.008G199800 [exp] 78 / 1e-15 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.012G014700 [exp] 75 / 1e-14 AT1G12170 66 / 1e-11 F-box family protein (.1) Potri.016G012500 [exp] 74 / 3e-14 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G154700 [exp] 74 / 3e-14 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318400 [exp] 72 / 2e-13 AT3G06240 142 / 3e-38 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007040 pacid=23168970 polypeptide=Lus10007040 locus=Lus10007040.g ID=Lus10007040.BGIv1.0 annot-version=v1.0 ATGAAGCGATCAGTCATGAGCAAAATCTTAACCTCCATAAAGAAACTCCTATGGAAGCAAAGAAGAAGAAGAAGAAGGTCGGCTTCTGCCAGCGGTGGCG GATCGTCCTTCTTGCCGGAGGAGATGGTGTTTGACATATTGGTCAAACTTCCGGAAAAGAGTCTGTTACGGTTTAAGTGCTTGTCCACCGGCATTCTCAA TCTCATGCAGTCCTCGCATTTCGTGGCTGCACACGTTGAACATCTACGCAAAAACGGTAAAGGCATCTTCCTCCTCGCTTATAGAGACGTGGCTGATAAT AGTACTAGTAGGACTGGTGGCTGTTCATTTTCCTTGCCCTTTTTGAAGAACCCTAATTTGGAACATCCCAGGTTGGAATATGTGGGATCATCGAACGGTT TAGTTTGTTTCAACATTTTCAAAGATGAGAAGAGGTTTGGGACTACTTCTATAAATATGGTTGTATGGAATCCAGCCACCTCCAATTTCAGATTTGCTCC TCCTCAACCTCCTCTGATCTCCTCTTTGGCCATGGTGCGTTACGGATTTGGGTACGATTCTTTGTCCGATGATTACAAGTCCGTCAGGCTATCTGTTTGC GTAAGGGCGGGTGTATCAGCACATGTGCTGAGCTGGGGGAAGATGAGTTGGACAAAGCTCACATATGAAAAACATAGCTGCTTTGACAGACGAATCTTCG CAATCGAACCTGATGCTGTGACGAGCAAAGGGAGAGCGAATTGGATGGTTAATCCAACGTCTGATTCAGCAAAGTTTGTTTCGTTCAAACTCGGTGAAGA TGAATTCGAGTTGATATATCCGCCATTAAAAGACTACAATGGGAAGAAGAAAACCGTATGTGTTTGGAAAGGATCACTTGCCATGCTCATTCAGAATGGC ACCAGCCCGGATACTACTCTTTCTCTTTGGCTGTTCAATGATGATGATGATGATGATCGAGATCGTTGGTCCAAACTGTTTACGGTGCAAACGGATTATC CTTGCAAGTGGATGAGCGAACCAGAGTACATATGGAGGACCGACGTTGCAAATTCGTTCTTGGTGTATGAATTGGATGATCGTCTTGCCTTGGCTTCCAT GGCAGGGGAGCTCAGGTCTCGATTTGGTTATCGTATCGGAAAAGGTTTTGAGTTCGCTGCGACATCAATTCCGATCCCTGGCTCGAGTTTGGGTACGTAG
AA sequence Show only first row Show all	>Lus10007040 pacid=23168970 polypeptide=Lus10007040 locus=Lus10007040.g ID=Lus10007040.BGIv1.0 annot-version=v1.0 MKRSVMSKILTSIKKLLWKQRRRRRRSASASGGGSSFLPEEMVFDILVKLPEKSLLRFKCLSTGILNLMQSSHFVAAHVEHLRKNGKGIFLLAYRDVADN STSRTGGCSFSLPFLKNPNLEHPRLEYVGSSNGLVCFNIFKDEKRFGTTSINMVVWNPATSNFRFAPPQPPLISSLAMVRYGFGYDSLSDDYKSVRLSVC VRAGVSAHVLSWGKMSWTKLTYEKHSCFDRRIFAIEPDAVTSKGRANWMVNPTSDSAKFVSFKLGEDEFELIYPPLKDYNGKKKTVCVWKGSLAMLIQNG TSPDTTLSLWLFNDDDDDDRDRWSKLFTVQTDYPCKWMSEPEYIWRTDVANSFLVYELDDRLALASMAGELRSRFGYRIGKGFEFAATSIPIPGSSLGT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06240			F-box family protein (.1)		Lus10007040 [exp]	0	1
AT1G69080			Adenine nucleotide alpha hydro...		Lus10036814 [exp]	13.8	0.6464
AT5G47740			Adenine nucleotide alpha hydro...		Lus10019487 [exp]	16.2	0.6428
AT5G44150			unknown protein		Lus10014193 [exp]	42.7	0.4944
AT5G67420	AS2	ASL39, LBD37	ASYMMETRIC LEAVES2-LIKE 39, LO...		Lus10018697 [exp]	228.5	0.4584

Compare expression of checked genes

Lus10007040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.