Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76370 235 / 1e-73 Protein kinase superfamily protein (.1) AT1G20650 223 / 6e-69 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT3G20530 221 / 3e-68 Protein kinase superfamily protein (.1) AT1G61860 216 / 3e-66 Protein kinase superfamily protein (.1) AT5G02800 216 / 3e-66 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT1G07870 216 / 8e-66 Protein kinase superfamily protein (.1.2) AT5G01020 212 / 2e-64 Protein kinase superfamily protein (.1) AT5G18610 214 / 3e-64 Protein kinase superfamily protein (.1.2) AT5G13160 212 / 9e-64 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT4G13190 208 / 3e-63 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030741 [exp] 229 / 3e-71 AT1G20650 523 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10016021 [exp] 225 / 2e-69 AT1G20650 516 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10041426 [exp] 219 / 3e-67 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10011148 [exp] 218 / 1e-66 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1) Lus10043050 [exp] 217 / 2e-66 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1) Lus10036499 [exp] 217 / 2e-66 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 218 / 8e-66 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10012249 [exp] 223 / 4e-64 AT1G20720 1074 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10012814 [exp] 214 / 5e-64 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G215100 [exp] 220 / 5e-68 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G009300 [exp] 220 / 1e-67 AT1G20650 548 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.005G252000 [exp] 218 / 9e-67 AT1G20650 531 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 217 / 1e-66 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.008G046500 [exp] 215 / 8e-66 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G018500 [exp] 213 / 3e-65 AT3G20530 473 / 2e-167 Protein kinase superfamily protein (.1) Potri.009G026500 [exp] 214 / 4e-65 AT1G07870 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G143200 [exp] 214 / 8e-65 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G133300 [exp] 213 / 1e-64 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 214 / 2e-64 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10007041 pacid=23168981 polypeptide=Lus10007041 locus=Lus10007041.g ID=Lus10007041.BGIv1.0 annot-version=v1.0 ATGTCTAAGCTTTTCCGATGTTTTGGATCCTCAAGCAACAGCAAAGACAATGGAGCTGGAGAAGATGATATTGTTCCAGATTTTGGTTGTTTCGGGAACT GTGGAAGAGGTGGCCGGAGAAAACCGGAGGGGTCCGCTGACGGTGCTACGCTGACGGTGCTAGCGAGTTTCCTGACATTCCAGGATTTAATGCACACGGT TTCCGATTCTGACTTGACTTGCCCTCTTAAATTAAGAGTTCGGCGATTCAAGTTTGTTGAATTGGCTCGAGCCACCAATTCATTTGGAGATGGAAACCGA GTTGGGGAAGGCGGGTATGGAGATGTATACAGAGGACGCTTAGATAATGGGCAAGAGGTTGCTGTTAAAAAGCTCAAGTTAGGAAGTGGTGACGGTACTA GGGGAGGCGAGGCCATAAATGATTTTCGTCGTGAACTTGAGATGCTGGGGGGAATCAATCACCCAAATATCATACAGCTAGTTGGTTTTTGCGTTGAAGG GGGCAATCATTTGCTAGTGTTGGAGTATGCAACGGGAGGCTCCCTGTTTGATGCAATGTTCGAAAATAAACAAGGACAGTTTACTTGGCAAAATCGGATG CGGATTCTTGCTAATGTAGCCCGAGGACTGGCGTATTTGCACTACGAGAAGCGGGTTATCCTTCGGGATTTGAAATCGGCCAATATCCTTCTGTTCGACA ACTTTCAAGCAAAGTTGGCCGACTTTGGCACGGTAAGGCCAGGTCCCGAGGGGGATGAGACCCATGTAACCACGATACCGGCAGGCACTATCGGGTACAT AGAACCTAGGTATTTTGAGACTCACCAACTCACTTACCGAAGCGACCTTAACTCTTTCGCGGTTGTGATACTGGAAGTTGTTTGTGGAAGAAGAGCAATA GATCCTACACGGCCGACTGAAGAACGAAGCATTTCCGCTTGGGCATTACGAGAGTTCAGTCGGCGCCAAGAGATTGGTCCCGTCGAACTTCAAATGGTGG ACCCAGCCCTAGACGGTCAATATGAAGATGTCCACCTGCGGTATGCTCTTGGTATATGCCAAGAGTGTTTGATAAGGGAACGTTGTGAAGCTACACAAGA CCTCAGGAAAATTGTGAAGGGATTTACCTTCTTAGCAGACGTAAATGGAGAAGGAAATGTTGAGACAACAAGAAAATTTTTAGACTTTGTTGAATTGGGG AGGAGAACACAGGGATTTTATGGGCAGCAGGAGCCGCAGCAGGAGCCGCAGCAGGAGCCGGAGCAGGAGCAGGAGCAGTAA
AA sequence Show only first row Show all	>Lus10007041 pacid=23168981 polypeptide=Lus10007041 locus=Lus10007041.g ID=Lus10007041.BGIv1.0 annot-version=v1.0 MSKLFRCFGSSSNSKDNGAGEDDIVPDFGCFGNCGRGGRRKPEGSADGATLTVLASFLTFQDLMHTVSDSDLTCPLKLRVRRFKFVELARATNSFGDGNR VGEGGYGDVYRGRLDNGQEVAVKKLKLGSGDGTRGGEAINDFRRELEMLGGINHPNIIQLVGFCVEGGNHLLVLEYATGGSLFDAMFENKQGQFTWQNRM RILANVARGLAYLHYEKRVILRDLKSANILLFDNFQAKLADFGTVRPGPEGDETHVTTIPAGTIGYIEPRYFETHQLTYRSDLNSFAVVILEVVCGRRAI DPTRPTEERSISAWALREFSRRQEIGPVELQMVDPALDGQYEDVHLRYALGICQECLIRERCEATQDLRKIVKGFTFLADVNGEGNVETTRKFLDFVELG RRTQGFYGQQEPQQEPQQEPEQEQEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76370			Protein kinase superfamily pro...		Lus10007041 [exp]	0	1
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10007007 [exp]	4.2	0.9494
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Lus10001139 [exp]	5.1	0.9474
AT1G49880		EMB3106, AtErv1...	EMBRYO DEFECTIVE 3106, Erv1/Al...		Lus10002121 [exp]	5.9	0.9224
AT2G46850			Protein kinase superfamily pro...		Lus10005138 [exp]	7.1	0.9146
AT1G09800			Pseudouridine synthase family ...		Lus10035791 [exp]	7.7	0.9342
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10017285 [exp]	10.4	0.9451
AT5G57280		RID2	root initiation defective 2, S...		Lus10028960 [exp]	12.4	0.9270
AT5G09380			RNA polymerase III RPC4 (.1)		Lus10019022 [exp]	13.6	0.9128
AT2G16940			Splicing factor, CC1-like (.1....		Lus10034466 [exp]	14.1	0.9116
AT2G26830		EMB1187	embryo defective 1187, Protein...		Lus10019424 [exp]	15.2	0.9077

Compare expression of checked genes

Lus10007041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.