Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04110 561 / 0 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G05920 530 / 4e-179 Subtilase family protein (.1) AT4G34980 509 / 6e-171 SLP2 subtilisin-like serine protease 2 (.1) AT5G67360 509 / 8e-171 ARA12 Subtilase family protein (.1) AT1G01900 508 / 5e-170 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT5G51750 505 / 7e-169 ATSBT1.3 subtilase 1.3 (.1) AT3G14240 504 / 1e-168 Subtilase family protein (.1) AT3G14067 499 / 9e-167 Subtilase family protein (.1) AT5G59810 462 / 2e-152 ATSBT5.4 Subtilase family protein (.1) AT2G04160 460 / 1e-151 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028893 [exp] 785 / 0 AT1G04110 580 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10006689 [exp] 770 / 0 AT2G05920 563 / 0.0 Subtilase family protein (.1) Lus10006303 [exp] 769 / 0 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10007033 [exp] 754 / 0 AT5G67360 551 / 0.0 Subtilase family protein (.1) Lus10002244 [exp] 750 / 0 AT5G67360 567 / 0.0 Subtilase family protein (.1) Lus10029575 [exp] 750 / 0 AT5G67360 552 / 0.0 Subtilase family protein (.1) Lus10006306 [exp] 749 / 0 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10029570 [exp] 749 / 0 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10007036 [exp] 747 / 0 AT5G67360 564 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G006570 [exp] 917 / 0 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G113700 [exp] 912 / 0 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 893 / 0 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 807 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 796 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G074600 [exp] 566 / 0 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.002G256300 [exp] 555 / 0 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.004G173900 [exp] 524 / 2e-176 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.006G141200 [exp] 514 / 9e-173 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.012G131500 [exp] 514 / 1e-172 AT5G51750 1102 / 0.0 subtilase 1.3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10007044 pacid=23168945 polypeptide=Lus10007044 locus=Lus10007044.g ID=Lus10007044.BGIv1.0 annot-version=v1.0 ATGCTGTCAACCCTGTCAGTTTTGTTTCTCCTGGTGCTTACTTTCAGGATCGGTTCATCTGAAATTATTCTACAAGAATCAAGCAATCAGGAAACTTACA TAGTCTTTGTGGAGAGACCGGTTGGGATCGAATCAGCCGAGGCAGAAGATTTACAGAGGTGGTACAGAACCTTCTTACCAGAAGTGTCAACAGACTCAGA CTCGAACGAAGAAGAAGATCGTATGATGTACTCGTACCGTACTGTGCTGACAGGTTTTGCTGCAAGACTTACTGTTGGCGAAGTCAACGAGATGTCACAG AAGGAAGGATTCGTGTCAGCTCGTGTCGAGAAAACAATGCATCTCCACACGACTCACAGTGCCAGCTTCTTGGGTCTGAATCAGGACTACGGGCTATGGA ACCGTTCGAATTTCGGAAAGGGAGTCGTTATAGGAGTATTGGACACTGGGGTCACGCTGAACCACCCATCGTTCGACGACAAAACAATGCCCCCTCCACC TGCAAAATGGAAAGGCAGATGTGAGTTCAAGAGAAAAGTGTGCAACAACAAGATCATTGGCGCAAGAACGTTCCTTTCTCCGCGGCAGAAGCCAATCGAT GACAACGGACACGGGACTCACACAGCAGGGACAGCTGCAGGAAGTCCAGTCTCGGGAGTAAGTTACTACGGCCAGCTGAACGGTACCGCTACCGGTATAG CTCCTTTAGCGCATTTGGCAGTGTACAAAATCTGTAACGCGGTAGGAACATGTAAAGAAACCGATATACTTGCTGCAATGGATGCTGCAGTAGAGGACGG AGTCGATATCCTTTCGCTTTCTCTTGGTACGGGATCGCTCCCTTTTTACGAAGATGGAATTGCAGTCGGTGCATACGGTGCAGCTCAAAAGGGTGTTCTT GTTACTTGTTCTGCTGGAAATTTAGGTCCGAGTAGGGCTTCATTATCGAACGAGGCTCCGTGGATTCTAACGGTGGGGGCAGGTACACTGGATAGAAGTG TCAGAGCAACAGTAAAGCTTGGAAACAATGTAGAAATTAATGGGGAGTCCCTTTACCAACCTAAAGCAGGTTTACCAGCTTCCAAGCTGTTGCCTCTTGT TTATATTGCCACGTCAGCATTATGCGAACCGGGGTCCTTGAAAGGCAGCGATGTTAAAGGGAAAGTGGTCCTGTGCGAGCTCGATGCAAGCCGGTTGGGG AAACTACAGAAAGGGGAGGAAGTGAAGAGAGCTGGTGGTGCTGCAATGATACTCATGAATGATGAACAAGCTGGGTTTGAAACGACGCCTGATCTACATG TCCTGCCAGCTAGCCACGTCAGCTATGCTGACGGGGTGAACATAAAAAAGTACATGAACACGTCATCATCACCAACTGCAACGGTGGTGTTCAAGGGAAC TGTCTTTGGACTGCCGTATGCTCCTCAGGTGGCGAAATTCTCGTCCATAGCACCTAGCTTGGCGAGTCCCGGGATCTTGAAACCGGACATTCTCGGACCA GGACATCGCATTTTGGCTGCGTGGCCAAGTTCACCGGGTCGATCATCGTTTAATCTGATGTCGGGGACTTCAATGGCTTGCCCACATCTTAGTGGAATTG CTGCATTGCTTAAAAGCTCCCACCCTGACTGGTCTCCTGCTGCGATAAAATCCGCAATCATGACCACTGCTGATTTGACCGATCTCGGAGGCAATCCGAT TACTGACCAACAATTTGCTGTGGTCAATGTCTTTTCCATTGGTTCCGGCCATGTGAATCCAAGGAAGGCAGACAATCCGGGGCTTGTGTACGATATCCAA CCAGATGACTACATTCCTTATTTGTGCGGCTTGGGATACAACGACACTCAGGTCGGGTTCACTGTGCAGAAAAGAGTGGAGTGCTCGAAATTGTCAAAGA CACCTGAAGGACACCTAAACTACCCTTCTTTCACCGCGAGACTGGGGTCCGATTCTGTTACTTACACGAGAACTGTGACGAACGTTGGACCGGCTAAGTC AACTTACTCTCCTCGCATCGTTGCACCTCGAGGTGTTCATGTTGAGGTCAGGCCTGAGGTGCTTCGTTTCAGGGGAACGAAGCAGTCTGCAAGTTATTCG GTGACATTCAGGAGAAGAACTAAGAATGAAGAAGATATTCCTTTTGCACAGGGCTATCTGACATGGGTTTCGAAGAAGCATGCCGTTAGGAGCCCTATTG TTATCAACTTTGAGTGA
AA sequence Show only first row Show all	>Lus10007044 pacid=23168945 polypeptide=Lus10007044 locus=Lus10007044.g ID=Lus10007044.BGIv1.0 annot-version=v1.0 MLSTLSVLFLLVLTFRIGSSEIILQESSNQETYIVFVERPVGIESAEAEDLQRWYRTFLPEVSTDSDSNEEEDRMMYSYRTVLTGFAARLTVGEVNEMSQ KEGFVSARVEKTMHLHTTHSASFLGLNQDYGLWNRSNFGKGVVIGVLDTGVTLNHPSFDDKTMPPPPAKWKGRCEFKRKVCNNKIIGARTFLSPRQKPID DNGHGTHTAGTAAGSPVSGVSYYGQLNGTATGIAPLAHLAVYKICNAVGTCKETDILAAMDAAVEDGVDILSLSLGTGSLPFYEDGIAVGAYGAAQKGVL VTCSAGNLGPSRASLSNEAPWILTVGAGTLDRSVRATVKLGNNVEINGESLYQPKAGLPASKLLPLVYIATSALCEPGSLKGSDVKGKVVLCELDASRLG KLQKGEEVKRAGGAAMILMNDEQAGFETTPDLHVLPASHVSYADGVNIKKYMNTSSSPTATVVFKGTVFGLPYAPQVAKFSSIAPSLASPGILKPDILGP GHRILAAWPSSPGRSSFNLMSGTSMACPHLSGIAALLKSSHPDWSPAAIKSAIMTTADLTDLGGNPITDQQFAVVNVFSIGSGHVNPRKADNPGLVYDIQ PDDYIPYLCGLGYNDTQVGFTVQKRVECSKLSKTPEGHLNYPSFTARLGSDSVTYTRTVTNVGPAKSTYSPRIVAPRGVHVEVRPEVLRFRGTKQSASYS VTFRRRTKNEEDIPFAQGYLTWVSKKHAVRSPIVINFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10007044 [exp]	0	1
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Lus10041704 [exp]	15.5	0.7094
AT1G78090		ATTPPB	Arabidopsis thaliana trehalose...		Lus10019010 [exp]	20.7	0.6153
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10015703 [exp]	20.9	0.6885
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10021328 [exp]	25.1	0.6723
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10003329 [exp]	27.1	0.6871
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10041851 [exp]	30.5	0.6784
AT5G53635			F-box/RNI-like/FBD-like domain...		Lus10037604 [exp]	43.6	0.6197
AT5G57580			Calmodulin-binding protein (.1...		Lus10011248 [exp]	46.9	0.6636
AT4G35370			Transducin/WD40 repeat-like su...		Lus10004613 [exp]	47.0	0.6396
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10002849 [exp]	51.8	0.6412

Compare expression of checked genes

Lus10007044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.