Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04110 574 / 0 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G67360 542 / 0 ARA12 Subtilase family protein (.1) AT2G05920 532 / 3e-179 Subtilase family protein (.1) AT3G14067 532 / 4e-179 Subtilase family protein (.1) AT4G34980 523 / 8e-176 SLP2 subtilisin-like serine protease 2 (.1) AT3G14240 521 / 7e-175 Subtilase family protein (.1) AT1G01900 514 / 6e-172 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT5G51750 500 / 2e-166 ATSBT1.3 subtilase 1.3 (.1) AT2G04160 483 / 5e-160 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 462 / 9e-152 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002995 [exp] 877 / 0 AT1G04110 584 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10007046 [exp] 862 / 0 AT1G04110 603 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10006702 [exp] 849 / 0 AT1G04110 596 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10006704 [exp] 847 / 0 AT1G04110 594 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10028893 [exp] 774 / 0 AT1G04110 580 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10029570 [exp] 738 / 0 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10007044 [exp] 737 / 0 AT1G04110 590 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10029575 [exp] 734 / 0 AT5G67360 552 / 0.0 Subtilase family protein (.1) Lus10008919 [exp] 726 / 0 AT5G67360 561 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G118800 [exp] 937 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.019G006570 [exp] 812 / 0 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 804 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G113700 [exp] 803 / 0 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 769 / 0 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G074600 [exp] 592 / 0 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.002G256300 [exp] 590 / 0 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.006G141200 [exp] 534 / 5e-180 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.003G067000 [exp] 523 / 8e-176 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.001G167300 [exp] 521 / 5e-175 AT3G14067 978 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10007045 pacid=23168966 polypeptide=Lus10007045 locus=Lus10007045.g ID=Lus10007045.BGIv1.0 annot-version=v1.0 ATGAAGCAAATGAACCTCTCAGCAACAATGGCTCTTGTTTCTTTGTTCTATCTTCTTCTTTTGCTCAACTCCATCTCTCACATTACTCAAGCAGTCAAAC CCACAGCTGAAGAAGCAAACAGCAGCTTACAAACCTACATTGTCCATGTCAGGAAACCTGTTGGAACAACATTGGCTGAGTCTATTGACAAGCAGGCTTA TTACCGATCATACTTACCAACGGGTACCATGAGTTTCGATGAAGAGCAGGAAGACGAGGAGCATGATCGTATGATTTATTCTTACGATTATGTAATCAGT GGGTTTGCAGCAAGACTTACAGAAGAGGAAGTGAGTGACATGGCAAAGAAGGATGGTTTTGTGCAAGCACATCCTGAGAGGATATTTCATCCTCAGACAA CACATACCCCACAGTTCTTGGGTTTGCAACAAGGACCGGGATTCTGGAATCAGTCAAATTTCGGGGGAGGAGTCATCGTTGGAGTGCTGGATACGGGAAT TAATCCAGCCCATCCTTCATTCTCTGACGAGGGAATGCCACCGCCTCCTTCCAAGTGGAAAGGCAAATGCGAGTTCGGCAACTTGAAATGCAACAACAAG CTGATCGGTGCAAGGATTTTCAATCTTGCCGGTAAGAAGAAGGGAATAGCAAGTTCACCATTTGATGAAGATGGACATGGTACTCACACATCAAGTACAG CTGCTGGTAACTTCGTGCAAAATGCTGATGTTCTGGGAAATGCAAAGGGCACTGCAGCAGGAATGGCACCTAATGCGCATTTAGCAATGTACAAAGTGTG CTCTCCTGAAGATTGTGCTGGAAGTGACGTACTCGCTGCACTTGATGCAGCTGTCCATGATGGAGTTGATGTGATCTCAATCTCCTTAGGTGGCGAGCCA GGTGTCCCACTGTTTAGTGACACAATTGCTATTGGCTCTTATGCAGCTATGCAGAAAGGGATCTTTGTAAGCTGTGCAGCTGGAAATGCCGGTCCTTTTA AAAACACTCTATCCAATGAAGCCCCATGGTATCTCACAGTGGGTGCAAGCACTTTAGATAGGAGCATTGTTGTCACAGCAAAGCTAGGAAATGGTGAAGA ACTCGACGGTCAATCTCTTTACAGACCAAATAAATTAGAAGGAACACAATTACCTATCGTCGTTGCTGGCAACAAAAGGGATCCAAATTCAACATTTTGC GGCGAGGGGGCACTGAATGGCATGGACGTGAAGGGCAAAGTTGTCATCTGCGAAAAAGGTGGTGGGGTTGCTAGATTCAATAAAGGCAAGGAAGTGAAAG CTTCTGGGGGTGCAGCCATGATACTCATTAATGGCGAGGCAGATGGCTTTACTACTATAGCTGATCCTCATGTTCTTCCTTCTACCTATATCAGCTTTGA AGCAGGACAAAAGATCAAAGCGTACCTTAAAACAACGGAAAAGCCAACAGCGGCATTGTTGTTCAAAGGGACTTTTATAGGAAACACAGCAGCTCCTACA GTTGCTTCATTCTCGTCAAGAGGTCCGACACTGCAAGCCAAAGGGATTCTAAAACCGGACATTATTGGCCCCGGTGTGAGCATCGTAGCTGCATGGCCAT ACCCTCTAGAGAACAGCACAAACATAAAATCAGCATTCATGCTTCAGTCTGGTACATCGATGGCATGCCCTCATGTGAGCGGAATAGCAGCCTTGCTCAA AAGCTCGCATCCTTCTTGGTCACCAGCTGTCATAAAATCTGCAATGATGACAACTGCTGATTTGCTTAACGTGGACGGCAAGCAAATTGTCGATCAGAAT CTTCGTCCGGCAAATTTCTTTGCCACTGGATCAGGCCACGTGAATCCAACAAGGGCAAATGACCCAGGATTAGTATACGATATCCAACCTGAAGATTATG TACCATTCCTATGCGGACTCGGCTATACAGAAGGTCAAGTTGGGATCATTGCACATCAACACGTCGATTGCTCCAAACAGGCAACCAAAACAGCAGGGCA GTTGAACTACCCTTCATTTTCCGTGACATTCGGAACTCATCCACAGACTTTCTCAAGGACAGTGACAAATGTCGGGGAAGCAAACTCATCCTATGCCGTA ACCATTCTTAATCCGGTAGGAGTTGATGTGATCGTTAACCCCTCCCATTTAAAGTTCTCAAAGATGGGCGAGAAAGCAACATACACCGTGACATTCAGTC GCGATGGAGGTAGTAGCATTACGGGGGGATTCGCTGAAGGATACATCAAATGGGTTTCAGACAAGCACTTTGTCAGGAGTCCGGTCTCTGTGATGTTCAG CTGA
AA sequence Show only first row Show all	>Lus10007045 pacid=23168966 polypeptide=Lus10007045 locus=Lus10007045.g ID=Lus10007045.BGIv1.0 annot-version=v1.0 MKQMNLSATMALVSLFYLLLLLNSISHITQAVKPTAEEANSSLQTYIVHVRKPVGTTLAESIDKQAYYRSYLPTGTMSFDEEQEDEEHDRMIYSYDYVIS GFAARLTEEEVSDMAKKDGFVQAHPERIFHPQTTHTPQFLGLQQGPGFWNQSNFGGGVIVGVLDTGINPAHPSFSDEGMPPPPSKWKGKCEFGNLKCNNK LIGARIFNLAGKKKGIASSPFDEDGHGTHTSSTAAGNFVQNADVLGNAKGTAAGMAPNAHLAMYKVCSPEDCAGSDVLAALDAAVHDGVDVISISLGGEP GVPLFSDTIAIGSYAAMQKGIFVSCAAGNAGPFKNTLSNEAPWYLTVGASTLDRSIVVTAKLGNGEELDGQSLYRPNKLEGTQLPIVVAGNKRDPNSTFC GEGALNGMDVKGKVVICEKGGGVARFNKGKEVKASGGAAMILINGEADGFTTIADPHVLPSTYISFEAGQKIKAYLKTTEKPTAALLFKGTFIGNTAAPT VASFSSRGPTLQAKGILKPDIIGPGVSIVAAWPYPLENSTNIKSAFMLQSGTSMACPHVSGIAALLKSSHPSWSPAVIKSAMMTTADLLNVDGKQIVDQN LRPANFFATGSGHVNPTRANDPGLVYDIQPEDYVPFLCGLGYTEGQVGIIAHQHVDCSKQATKTAGQLNYPSFSVTFGTHPQTFSRTVTNVGEANSSYAV TILNPVGVDVIVNPSHLKFSKMGEKATYTVTFSRDGGSSITGGFAEGYIKWVSDKHFVRSPVSVMFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10007045 [exp]	0	1
AT1G65090			unknown protein		Lus10009554 [exp]	1.4	0.8138
AT4G18425			Protein of unknown function (D...		Lus10013970 [exp]	1.7	0.8109
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10041851 [exp]	1.7	0.8805
AT1G09030	CCAAT	NF-YB4	"nuclear factor Y, subunit B4"...		Lus10029908 [exp]	3.5	0.7607
AT1G71390		AtRLP11	receptor like protein 11 (.1)		Lus10016401 [exp]	5.7	0.7908
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10016402 [exp]	5.9	0.7888
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10015595 [exp]	7.3	0.7879
AT5G42470			unknown protein		Lus10033139 [exp]	7.9	0.7734
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10026344 [exp]	8.8	0.7611
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10001465 [exp]	10.0	0.7709

Compare expression of checked genes

Lus10007045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.