Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04110 572 / 0 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT4G34980 541 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT3G14240 539 / 0 Subtilase family protein (.1) AT5G67360 537 / 0 ARA12 Subtilase family protein (.1) AT2G05920 536 / 0 Subtilase family protein (.1) AT3G14067 517 / 3e-173 Subtilase family protein (.1) AT5G51750 505 / 8e-169 ATSBT1.3 subtilase 1.3 (.1) AT2G04160 498 / 4e-166 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT1G01900 497 / 1e-165 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT5G59810 466 / 1e-153 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006702 [exp] 1439 / 0 AT1G04110 596 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10006704 [exp] 1432 / 0 AT1G04110 594 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10007045 [exp] 867 / 0 AT1G04110 603 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10002995 [exp] 815 / 0 AT1G04110 584 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10007044 [exp] 721 / 0 AT1G04110 590 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10028893 [exp] 716 / 0 AT1G04110 580 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10029570 [exp] 687 / 0 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10029575 [exp] 687 / 0 AT5G67360 552 / 0.0 Subtilase family protein (.1) Lus10007036 [exp] 674 / 0 AT5G67360 564 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G118800 [exp] 867 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 764 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G113700 [exp] 763 / 0 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.019G006570 [exp] 758 / 0 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 748 / 0 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G074600 [exp] 582 / 0 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.002G256300 [exp] 558 / 0 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G071800 [exp] 547 / 0 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.001G163600 [exp] 542 / 0 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.006G141200 [exp] 538 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10007046 pacid=23168967 polypeptide=Lus10007046 locus=Lus10007046.g ID=Lus10007046.BGIv1.0 annot-version=v1.0 ATGTCTGCCATCTCTTCCATCTGTATTTTTTTCTTCATCAACTTCGTTTTCCAGACTCACGCTGAAAACACGACAGCGAATCTGGAGAGTGATTTAGAGA CTTACATTGTTCACGTCGTAAATCAACCAGACAGCAGAAATTATGGTGGGTTAGAAGATCTAGAGGCTTGGCACGGGTCATTTTTGCCCGTCGTCAGCAC ATCAAAGTCGAGGGATGCTCATCGACGTCTGCTTTACTCGTACCGAGATGTAATCAGCGGGTTTTCTGCAAGACTAACAAAAGAAGAGTTGATGGTCATG GAACTCAAAGATGGATTTGTATCAGCTCATCCAGAGAAAACATTCTATCTCCAGACAACCCGCAGCCCTCATTTCCTGGGTCTGGATCTAAAAGCAGGAG TCTGGAAACAAACCAACTATGGAAGTGGGGTTATCATTGGAGTCCTGGACACTGGAGTGTCTCCCAAGCATCCTTCATTTAACGGCAAAGAGATGTCACC ACCTCCACCGAAATGGAAAGGCAAGTGCGAGTTTAAAGTTTCACACTGCAATAACAAATTAATCGGTGCAAGGACTTTCAACCTCGGAGCTAAGGCTAAG AAAGGAGTCAAGCCTGAAACACCGATTGATCGAGATGGACATGGAACTCACACGGCAAGCACAGCAGCTGGTGCCTTTGTGAAGAATGCTAACGTGTTGG GAAATGCCAGGGGTACATCGGCAGGAATGGCACCTGGGGCCCACGTAGCGGTTTACAAGGTCTGCTCACAAGATTGTCTTGAAAGTGATATACTAGCAGG AATGGATGCAGCAATCCATGATGGTGTCGATGTGATCTCGATTTCACTGGGAGCAGATCCTGGCATACCACTGTATAAAGACAGTATTTCGGTAGGCGCT TTGGCAGCAACCCAGAAGGGGATACTTGTGAGCATGGCAGCTGGAAATTCTGGCCCTGGATATAGCACGTTATCTAGTGAAGCGCCGTGGCTTCTGACCG TTGGTGCAAGCACCATAGACAGAAAAGTTGTGGCTACAGCAAAGCTAGGAAATGGGAAGACATTTGATGGTGAATCACTTTACCAACCAAGAAACTTCCA CACAACTTCGCTGCCACTTGTTTATGCAGGGAAGAACAAGAGGCCATCGTCAGAATTATGTGGCAAAGGATCATTGAGAGGTATGAACGTGAAAGGCAAA GTAGTCCTGTGTGAAAGAGGTGTGGTCGATAGACTTGATAAAGGCAAGGAAGTGAAACGTGCCGGTGGTGCAGCCATGATACTTGCAAATGGACCAGAGG ATGGCTTCAGTACCTTAGCTGATCCCCATGTTCTCCCTGCTACACATGTCAGCTATGAAGCCGGACAGAAAATTAAAGCTTACATAAATTCAACAAAGAC ACCAACAGCAACCATCTTGTTCAAAGGAACTACCTTTGAAGGCACAACTGCTCCAGCTGTGACTTCCTTCTCTTCAAGAGGGCCCACGTTGGTATGCCGA GGAATTCTCAAGCCAGACATTATGGGTCCTGGAGTGAGCATACTAGCAGCATGGCCATCTCGTGGGAAGAACAAAACAAAGAGAGAACCAACCTTCAATA TTGAGTCAGGCACATCGATGGCATGCCCCCATCTGAGTGGCATTGCAGCACTGCTCAAACAATCTCATCCCACTTGGTCACCTGCTGCCATCAAATCCGC TATCATGACTACAGCCGATATTATAACCAGGAGAGGCGCTTCCATCAGTGATTATGACAATCGACCTGCAGACCTCTTCGCCATTGGATCTGGCCAGGTG AACCCATCAAAGGCAAATAACCCTGGTTTGATCTATGACATCCACCCTGCAGACTACACACAATATCTCTGTGGCTTAGGCTACACAGATAAACAAGTTC GGGTTATCTCCAGGACGCCAATTAAATGCAAAGCACAGAGAAAGTTACCTGTGGGACAGCTCAACTACCCTTCACTCTCGGTCACCCTGCATCAACGCTC CCAGACGTTAACAAGAACTGTTACAAATGTTGGCCAGGCAAACACAAGCTATTATGCAAAGATCACTCCTCCAATCGGGGTCCGTGTAAGCGTGAAGCCG ACCAATCTGCACTTCACAAAAGTGGGCCAGAGGGCAAAATACTCTGTGTCATTTAGTCTAACCAACAAAACCAGGCTACACCGCCAGTTTGCTCAAGGGT ATCTGTTGTGGGTTTCATCTGCTAAGCACAGTGTTAGAAGTCCCATCTCTGTGCTGTTCAACTGA
AA sequence Show only first row Show all	>Lus10007046 pacid=23168967 polypeptide=Lus10007046 locus=Lus10007046.g ID=Lus10007046.BGIv1.0 annot-version=v1.0 MSAISSICIFFFINFVFQTHAENTTANLESDLETYIVHVVNQPDSRNYGGLEDLEAWHGSFLPVVSTSKSRDAHRRLLYSYRDVISGFSARLTKEELMVM ELKDGFVSAHPEKTFYLQTTRSPHFLGLDLKAGVWKQTNYGSGVIIGVLDTGVSPKHPSFNGKEMSPPPPKWKGKCEFKVSHCNNKLIGARTFNLGAKAK KGVKPETPIDRDGHGTHTASTAAGAFVKNANVLGNARGTSAGMAPGAHVAVYKVCSQDCLESDILAGMDAAIHDGVDVISISLGADPGIPLYKDSISVGA LAATQKGILVSMAAGNSGPGYSTLSSEAPWLLTVGASTIDRKVVATAKLGNGKTFDGESLYQPRNFHTTSLPLVYAGKNKRPSSELCGKGSLRGMNVKGK VVLCERGVVDRLDKGKEVKRAGGAAMILANGPEDGFSTLADPHVLPATHVSYEAGQKIKAYINSTKTPTATILFKGTTFEGTTAPAVTSFSSRGPTLVCR GILKPDIMGPGVSILAAWPSRGKNKTKREPTFNIESGTSMACPHLSGIAALLKQSHPTWSPAAIKSAIMTTADIITRRGASISDYDNRPADLFAIGSGQV NPSKANNPGLIYDIHPADYTQYLCGLGYTDKQVRVISRTPIKCKAQRKLPVGQLNYPSLSVTLHQRSQTLTRTVTNVGQANTSYYAKITPPIGVRVSVKP TNLHFTKVGQRAKYSVSFSLTNKTRLHRQFAQGYLLWVSSAKHSVRSPISVLFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10007046 [exp]	0	1
AT1G76810			eukaryotic translation initiat...		Lus10023474 [exp]	7.7	0.7402
AT4G29035			Plant self-incompatibility pro...		Lus10011895 [exp]	11.0	0.7387
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10030505 [exp]	13.5	0.7339
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10028418 [exp]	13.9	0.7334
AT5G07480		KUOX1	KAR-UP oxidoreductase 1 (.1)		Lus10043000 [exp]	17.9	0.7316
AT5G54010			UDP-Glycosyltransferase superf...		Lus10008453 [exp]	19.6	0.7299
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	21.3	0.7293
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	22.8	0.7293
AT5G17600			RING/U-box superfamily protein...		Lus10008458 [exp]	24.2	0.7293
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10000381 [exp]	24.4	0.7044

Compare expression of checked genes

Lus10007046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.