Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11970 335 / 1e-113 YTH family protein (.1.2.3) AT1G30460 135 / 4e-35 C3HZnF CPSF30, ATCPSF30 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) AT5G58190 77 / 5e-15 ECT10 evolutionarily conserved C-terminal region 10 (.1.2) AT3G17330 72 / 1e-13 ECT6 evolutionarily conserved C-terminal region 6 (.1.2) AT1G48110 72 / 2e-13 ECT7 evolutionarily conserved C-terminal region 7 (.1.2) AT1G55500 69 / 1e-12 ECT4 evolutionarily conserved C-terminal region 4 (.1.2.3) AT3G13460 67 / 4e-12 ECT2 evolutionarily conserved C-terminal region 2 (.1.2.3.4) AT5G61020 67 / 6e-12 ECT3 evolutionarily conserved C-terminal region 3 (.1.2) AT3G13060 67 / 8e-12 ECT5 evolutionarily conserved C-terminal region 5 (.1.2) AT1G27960 66 / 1e-11 ECT9 evolutionarily conserved C-terminal region 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006706 [exp] 538 / 0 AT4G11970 335 / 1e-114 YTH family protein (.1.2.3) Lus10023254 [exp] 140 / 2e-36 AT1G30460 688 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Lus10027582 [exp] 83 / 5e-17 AT5G58190 417 / 6e-140 evolutionarily conserved C-terminal region 10 (.1.2) Lus10008853 [exp] 75 / 2e-14 AT1G30460 563 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Lus10037365 [exp] 73 / 6e-14 AT1G09810 323 / 7e-105 evolutionarily conserved C-terminal region 11 (.1) Lus10017111 [exp] 73 / 9e-14 AT1G48110 597 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10020269 [exp] 73 / 1e-13 AT3G13460 443 / 8e-147 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10018343 [exp] 73 / 1e-13 AT1G48110 592 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10033335 [exp] 72 / 2e-13 AT3G13060 653 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113500 [exp] 414 / 2e-144 AT4G11970 398 / 5e-138 YTH family protein (.1.2.3) Potri.011G089901 [exp] 146 / 8e-39 AT1G30460 613 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Potri.001G357800 [exp] 140 / 1e-36 AT1G30460 602 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Potri.018G149800 [exp] 76 / 7e-15 AT5G58190 417 / 3e-139 evolutionarily conserved C-terminal region 10 (.1.2) Potri.006G079900 [exp] 71 / 3e-13 AT5G58190 420 / 1e-140 evolutionarily conserved C-terminal region 10 (.1.2) Potri.010G152300 [exp] 71 / 4e-13 AT1G48110 572 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.004G223800 [exp] 70 / 8e-13 AT1G09810 352 / 2e-115 evolutionarily conserved C-terminal region 11 (.1) Potri.001G056100 [exp] 69 / 1e-12 AT3G13060 431 / 5e-144 evolutionarily conserved C-terminal region 5 (.1.2) Potri.003G222700 [exp] 69 / 1e-12 AT3G13460 520 / 4e-178 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.008G100200 [exp] 69 / 2e-12 AT1G48110 535 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF04146 [flax] [poplar] YTH YT521-B-like domain
Representative CDS sequence Show only first row Show all	>Lus10007048 pacid=23168934 polypeptide=Lus10007048 locus=Lus10007048.g ID=Lus10007048.BGIv1.0 annot-version=v1.0 ATGTCATCAGATACTGCAAAAGAAAATGCTTCCGTAGTTGATTCATCTGTGACTGATTGGAAACATGACGCGGGTAACTCAGATGACCTAGAGAGCTCAA GTTACAAAGGTAATGGTGATGGTTATACTAGGAATGAAAATGCAAGTCATCATATGGAAGGACATCAGTTCAAAAGCAAAAACGATAGGTTATATAATAC AAGGTATTTCATCATTAAAAGCTTGAACCATCATAATCTTCAACTGTCAGTCGATGAAGGAATTTGGGCTACCCAGGTCATGAATGAGCCAATTCTTGAA GAAGCCTTTAATAATTCTGGTAAAGTCATTTTAATATTTAGTGTCAACATGAGCGGTTTTTTCCAAGGATATGCTCAAATGGTCTCTTCCATTGGATTGA GGCATGATCATATCTGGAGTCAGGGAAGCGGTAAAGTTGGTTCTTGGGGACGAAGTTTTAAGGTTAAATGGTTGCAATTAAATGACCTGCCTTTCCAGAG GACACTTCACCTTAAGAATCCGTTGAATGAGTACAAACCTGTTAAAATTAGCCGAGACTGTCAGGAATTGCCTGAAGATATTGGCGAAGCCCTCTGTAGG TTAATTGATGGAGAGATCGATGTTGACAGCTCGCGTAAAAGTTTCCCCAGGAATGATTTTCATCTCAAAGCCACTTTTACAGAACATCCATATATACCAG GAGATGGAGAGTACAATGGACCTCAGTTCCATGTGCCATGGGGCAGAACACCGATGCCGTATCATCCATTCTTATACCACCATCCTGCTGATGCTAATGG TTTTCGCTCAGATAATCCCGGGTCCACAAGCACTGGTATGCCTGAAAGTCAACATCTTGCTTGTAGTCCATCAAAAGCTTCACGGAAGGCCGATTTTCAT GTTAATGGAAACTTTATTCATCCACTAGTGCCACATGGCGGTCCTTCTCAACCTGATTTCTGGGGACTGACAGCAGAAAGTCCTCGTGCTAGTACTCTCA CTAACGATGATTTTCTTGATATGGCTGCTGAAAAATCTCAAGCAACCGGGGAGACATCAAAAAGTAAACGGAGCAAAGATGATCCGTAA
AA sequence Show only first row Show all	>Lus10007048 pacid=23168934 polypeptide=Lus10007048 locus=Lus10007048.g ID=Lus10007048.BGIv1.0 annot-version=v1.0 MSSDTAKENASVVDSSVTDWKHDAGNSDDLESSSYKGNGDGYTRNENASHHMEGHQFKSKNDRLYNTRYFIIKSLNHHNLQLSVDEGIWATQVMNEPILE EAFNNSGKVILIFSVNMSGFFQGYAQMVSSIGLRHDHIWSQGSGKVGSWGRSFKVKWLQLNDLPFQRTLHLKNPLNEYKPVKISRDCQELPEDIGEALCR LIDGEIDVDSSRKSFPRNDFHLKATFTEHPYIPGDGEYNGPQFHVPWGRTPMPYHPFLYHHPADANGFRSDNPGSTSTGMPESQHLACSPSKASRKADFH VNGNFIHPLVPHGGPSQPDFWGLTAESPRASTLTNDDFLDMAAEKSQATGETSKSKRSKDDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11970			YTH family protein (.1.2.3)		Lus10007048 [exp]	0	1
AT4G11970			YTH family protein (.1.2.3)		Lus10006706 [exp]	1.0	0.9484
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Lus10009791 [exp]	2.8	0.9063
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10040048 [exp]	8.2	0.9007
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Lus10020879 [exp]	8.5	0.8927
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10003564 [exp]	8.9	0.8390
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Lus10016045 [exp]	11.3	0.8646
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10019619 [exp]	11.5	0.9037
AT1G19485			Transducin/WD40 repeat-like su...		Lus10039804 [exp]	13.0	0.8616
AT5G39350			Tetratricopeptide repeat (TPR)...		Lus10013176 [exp]	13.6	0.8554
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10006741 [exp]	14.0	0.8932

Compare expression of checked genes

Lus10007048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.