Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62975 125 / 3e-34 bHLH bHLH125 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G51780 112 / 2e-30 bHLH bHLH036 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G51790 112 / 3e-30 bHLH bHLH120 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G12540 112 / 1e-29 bHLH bHLH055 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G25400 106 / 3e-28 bHLH bHLH118 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G25410 102 / 9e-26 bHLH bHLH126 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G04150 48 / 2e-06 bHLH bHLH101 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G20970 44 / 4e-05 bHLH bHLH162 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G41240 43 / 9e-05 bHLH bHLH100 basic helix-loop-helix protein 100 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006707 [exp] 228 / 1e-75 AT1G62975 89 / 8e-22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027394 [exp] 123 / 1e-33 AT5G51780 149 / 9e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031677 [exp] 116 / 9e-31 AT5G51780 143 / 2e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027395 [exp] 112 / 3e-29 AT5G51780 138 / 9e-41 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031676 [exp] 102 / 7e-26 AT5G51780 119 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031675 [exp] 76 / 7e-16 AT4G25400 94 / 4e-24 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027396 [exp] 76 / 1e-15 AT4G25400 89 / 6e-22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011172 [exp] 47 / 2e-06 AT4G20970 144 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042128 [exp] 41 / 0.0004 AT4G20970 96 / 6e-25 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113400 [exp] 147 / 4e-43 AT4G25410 124 / 6e-35 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G134300 [exp] 122 / 2e-33 AT5G51780 143 / 1e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G132000 [exp] 122 / 2e-33 AT5G51790 154 / 6e-47 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G134400 [exp] 100 / 6e-25 AT5G51790 107 / 2e-28 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G132100 [exp] 99 / 1e-24 AT4G25410 120 / 3e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G053400 [exp] 44 / 4e-05 AT4G20970 160 / 2e-49 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G044400 [exp] 43 / 8e-05 AT4G20970 150 / 3e-46 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G129800 [exp] 40 / 0.0009 AT4G20970 109 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10007049 pacid=23168950 polypeptide=Lus10007049 locus=Lus10007049.g ID=Lus10007049.BGIv1.0 annot-version=v1.0 ATGGATCATAATTCCCCACCTTCCAACTTCATATTCCGACCTCCTCCCCCTCCTCCCCTTGCGGTCGTAAGTCCGAACATTGATGCCAACAATCATCAAC AGCCACCAGTATTGTCGTCGGGTCATGTTCGTATTAATGACACAATTATGGTCGCTCCGGCTCGTTCGAGGAGGCGAAAATCGACGTTGGTTGCTTTCGT CGGGGAGGAAGAGAAGGAGGAAGGAGCAAAGGGAAAGGAAGAGGAAGGAAAAGAGGATAGGAAGATGAAGAAGATGATGCATCGAGATGTTGAGAAGCAA AGGAGGCAGGAAATGAGTGGTCTCTATTCTTCTCTCAGGTCCCTCCTTCCCTTTGACTATCTTAAGGGGAAGAGGTCAGTCTCGGATCACATCCACCAGG CAGCAAATTACATCAAGCACCAAGAAGGCAAGATCGAGGAGCTGAGTTGCAAGAGAGATCAGCTCAAGAACACTTACATTCCCACCACTACTGGAAACTC TTCAGCATCAGCATCGTCTTCATCGACATCGAATTTGAGTGCTAACAACTACAACTTCCACGACAGGAGCAAGTCCGCGGTAATAATCAACGTTACGACT TGTTTGATTGGCATTGAGGTGACTCTGGAGGTCTGCGAGTTCCATATGGGCGTTTCGACAATCGTTGGAGCTTTGGCTGGTGAAGGGTTCAACATTGTCA GCTGCATCTCTGCTAGAGTCAATCATAGGATGGTTCACACCATCAAGGCTGAGGCGTGTGATGGGAGAAGCATTGATGCAGCTCAGTTACAAGAGAAGCT GAGAAACTCTGTAGTACTGAGGAGGAGTGCTCCTGATAAAACTGCTGGGTCTTACTAG
AA sequence Show only first row Show all	>Lus10007049 pacid=23168950 polypeptide=Lus10007049 locus=Lus10007049.g ID=Lus10007049.BGIv1.0 annot-version=v1.0 MDHNSPPSNFIFRPPPPPPLAVVSPNIDANNHQQPPVLSSGHVRINDTIMVAPARSRRRKSTLVAFVGEEEKEEGAKGKEEEGKEDRKMKKMMHRDVEKQ RRQEMSGLYSSLRSLLPFDYLKGKRSVSDHIHQAANYIKHQEGKIEELSCKRDQLKNTYIPTTTGNSSASASSSSTSNLSANNYNFHDRSKSAVIINVTT CLIGIEVTLEVCEFHMGVSTIVGALAGEGFNIVSCISARVNHRMVHTIKAEACDGRSIDAAQLQEKLRNSVVLRRSAPDKTAGSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62975	bHLH	bHLH125	basic helix-loop-helix (bHLH) ...		Lus10007049 [exp]	0	1
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10011010 [exp]	3.5	0.8284
AT4G22590		TPPG	trehalose-6-phosphate phosphat...		Lus10032244 [exp]	22.3	0.7566
AT5G16200			50S ribosomal protein-related ...		Lus10009148 [exp]	45.0	0.8067
AT5G03840		TFL-1, TFL1	TERMINAL FLOWER 1, PEBP (phosp...		Lus10021372 [exp]	55.9	0.7538
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028715 [exp]	57.7	0.8024
					Lus10021499 [exp]	63.5	0.7721
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10022407 [exp]	73.5	0.7696
AT2G37710		RLK	receptor lectin kinase (.1)		Lus10035627 [exp]	76.0	0.7622
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021136 [exp]	76.4	0.7602
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10011870 [exp]	80.6	0.7927

Compare expression of checked genes

Lus10007049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.