Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64120 215 / 5e-69 Peroxidase superfamily protein (.1) AT2G41480 213 / 8e-68 Peroxidase superfamily protein (.1) AT5G39580 205 / 4e-65 Peroxidase superfamily protein (.1.2) AT5G64110 203 / 2e-64 Peroxidase superfamily protein (.1) AT5G64100 178 / 1e-54 Peroxidase superfamily protein (.1) AT4G25980 166 / 3e-49 Peroxidase superfamily protein (.1) AT5G19880 156 / 5e-46 Peroxidase superfamily protein (.1) AT1G77100 151 / 5e-44 Peroxidase superfamily protein (.1) AT4G36430 144 / 2e-41 Peroxidase superfamily protein (.1) AT5G06720 143 / 7e-41 ATPA2 peroxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020421 [exp] 434 / 2e-156 AT2G41480 266 / 9e-89 Peroxidase superfamily protein (.1) Lus10007051 [exp] 380 / 1e-133 AT2G41480 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10007052 [exp] 370 / 5e-130 AT2G41480 400 / 1e-140 Peroxidase superfamily protein (.1) Lus10020422 [exp] 322 / 2e-111 AT2G41480 252 / 7e-83 Peroxidase superfamily protein (.1) Lus10012684 [exp] 214 / 2e-68 AT2G41480 395 / 2e-138 Peroxidase superfamily protein (.1) Lus10020826 [exp] 196 / 3e-61 AT2G41480 375 / 1e-130 Peroxidase superfamily protein (.1) Lus10015555 [exp] 181 / 2e-55 AT2G41480 432 / 9e-153 Peroxidase superfamily protein (.1) Lus10041784 [exp] 141 / 3e-40 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10010634 [exp] 140 / 9e-40 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G125000 [exp] 264 / 3e-88 AT2G41480 419 / 7e-148 Peroxidase superfamily protein (.1) Potri.006G069600 [exp] 203 / 2e-64 AT2G41480 498 / 6e-179 Peroxidase superfamily protein (.1) Potri.018G131600 [exp] 189 / 5e-59 AT2G41480 478 / 4e-171 Peroxidase superfamily protein (.1) Potri.007G019300 [exp] 145 / 8e-42 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1) Potri.005G118700 [exp] 145 / 1e-41 AT5G66390 504 / 0.0 Peroxidase superfamily protein (.1) Potri.011G027300 [exp] 141 / 3e-40 AT3G01190 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.004G023100 [exp] 139 / 2e-39 AT3G01190 403 / 1e-141 Peroxidase superfamily protein (.1) Potri.004G023200 [exp] 138 / 3e-39 AT3G01190 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.019G063201 [exp] 138 / 3e-39 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1) Potri.001G011500 [exp] 137 / 7e-39 AT5G06720 376 / 6e-131 peroxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10007050 pacid=23153238 polypeptide=Lus10007050 locus=Lus10007050.g ID=Lus10007050.BGIv1.0 annot-version=v1.0 ATGACGAAAATAGTCGGGATGTCGACGTTGTTTGTGGTTTGGCTTGTGATGTTTCTAGCCAACAGGTCCGCTGTTGATGCCCAAGGGACTCGGGTAGGCT TCTATTCCACTTCATGTCCACGAGCCGAGTCTATTGTTCGAGCAACGACAAGTGGCCCAAGCTGGACGGTGCCGACCGGGAGGAGAGACGGAAGGGTGTC ATTGGCATCGGACACAACCAATTTGCCGGCGTTCAATGACTCGGCCGCAGTTCAAATTAGCAAGTACACTCAGAAAGGACTCAACACTCAGGATCTTGTT GCTCTTTCTGGGGCCCACACAAACGCAAGCGCGCGGCCAGCCTGCGCGGTCTTCCGGTACAGGCTGTACAAGTGCCCGGGCTCTGCTTCCGGCGCCGACC CAACGCTCGACCCGGCATTTGTTCCCCAACTGAGGGCGGTCTGCCCACAGAACGGAAATGCGGCAAGGAGGGTTGCTATGGACACTGGAAGCCCTAACCG ATTCGACAATTCATACTACGCTAATCTCAGGAGCGGCCGAACTGTTCTTGAATCGGACTCTGTTCTGTGGACGGATGCCGGGACCAGAGTGATGGCACAG AGGTTCCTCGGGATCAGAGGATTGGCCGGCTTGACTTTCGCAGTGGAGTTCGCCAGATCGATGGTGAGGATGGGCAACATCGAAATCAAGAGCGGCGCCC AGGGTGAGATCCGGCGAGTCTGCTCCGCCGTCAACTGA
AA sequence Show only first row Show all	>Lus10007050 pacid=23153238 polypeptide=Lus10007050 locus=Lus10007050.g ID=Lus10007050.BGIv1.0 annot-version=v1.0 MTKIVGMSTLFVVWLVMFLANRSAVDAQGTRVGFYSTSCPRAESIVRATTSGPSWTVPTGRRDGRVSLASDTTNLPAFNDSAAVQISKYTQKGLNTQDLV ALSGAHTNASARPACAVFRYRLYKCPGSASGADPTLDPAFVPQLRAVCPQNGNAARRVAMDTGSPNRFDNSYYANLRSGRTVLESDSVLWTDAGTRVMAQ RFLGIRGLAGLTFAVEFARSMVRMGNIEIKSGAQGEIRRVCSAVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64120			Peroxidase superfamily protein...		Lus10007050 [exp]	0	1
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Lus10012619 [exp]	11.6	0.8805
AT2G41480			Peroxidase superfamily protein...		Lus10007051 [exp]	11.6	0.9238
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10017485 [exp]	11.7	0.9001
AT3G53990			Adenine nucleotide alpha hydro...		Lus10017207 [exp]	17.8	0.8971
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10026178 [exp]	18.1	0.9033
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10001491 [exp]	21.0	0.9062
AT5G38960			RmlC-like cupins superfamily p...		Lus10006550 [exp]	25.9	0.8502
AT3G04200			RmlC-like cupins superfamily p...		Lus10006549 [exp]	26.3	0.8439
AT1G47530			MATE efflux family protein (.1...		Lus10042130 [exp]	31.5	0.8923
AT4G35070			SBP (S-ribonuclease binding pr...		Lus10019790 [exp]	32.1	0.8926

Compare expression of checked genes

Lus10007050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.