Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64120 403 / 9e-142 Peroxidase superfamily protein (.1) AT2G41480 404 / 1e-141 Peroxidase superfamily protein (.1) AT5G39580 397 / 1e-139 Peroxidase superfamily protein (.1.2) AT5G64110 363 / 8e-126 Peroxidase superfamily protein (.1) AT5G64100 343 / 3e-118 Peroxidase superfamily protein (.1) AT4G25980 304 / 4e-102 Peroxidase superfamily protein (.1) AT1G77100 289 / 1e-96 Peroxidase superfamily protein (.1) AT5G17820 286 / 6e-96 Peroxidase superfamily protein (.1) AT4G11290 276 / 9e-92 Peroxidase superfamily protein (.1) AT5G06720 276 / 1e-91 ATPA2 peroxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007052 [exp] 643 / 0 AT2G41480 400 / 1e-140 Peroxidase superfamily protein (.1) Lus10020421 [exp] 432 / 6e-154 AT2G41480 266 / 9e-89 Peroxidase superfamily protein (.1) Lus10020422 [exp] 432 / 8e-154 AT2G41480 252 / 7e-83 Peroxidase superfamily protein (.1) Lus10012684 [exp] 405 / 1e-142 AT2G41480 395 / 2e-138 Peroxidase superfamily protein (.1) Lus10020826 [exp] 388 / 1e-135 AT2G41480 375 / 1e-130 Peroxidase superfamily protein (.1) Lus10007050 [exp] 380 / 1e-133 AT5G64120 215 / 6e-69 Peroxidase superfamily protein (.1) Lus10015555 [exp] 370 / 1e-128 AT2G41480 432 / 9e-153 Peroxidase superfamily protein (.1) Lus10039681 [exp] 283 / 4e-94 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10027163 [exp] 278 / 2e-92 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G125000 [exp] 477 / 7e-171 AT2G41480 419 / 7e-148 Peroxidase superfamily protein (.1) Potri.006G069600 [exp] 390 / 2e-136 AT2G41480 498 / 6e-179 Peroxidase superfamily protein (.1) Potri.018G131600 [exp] 371 / 5e-129 AT2G41480 478 / 4e-171 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 280 / 4e-93 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.017G038100 [exp] 280 / 4e-93 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.011G027300 [exp] 280 / 4e-93 AT3G01190 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.004G023200 [exp] 279 / 8e-93 AT3G01190 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.019G063201 [exp] 279 / 1e-92 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1) Potri.004G023100 [exp] 278 / 1e-92 AT3G01190 403 / 1e-141 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 277 / 6e-92 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10007051 pacid=23153237 polypeptide=Lus10007051 locus=Lus10007051.g ID=Lus10007051.BGIv1.0 annot-version=v1.0 ATGTCGACGCTGTTTGTGTTATGGCTTGTGATGTTTCTAGCCAACAGGTCCGCTGTTGATGCCCAAGGGACTCGGGTTGGCTTCTATTCAACCTCATGCC CACGAGCCGAGTCTATTGTTCGAGCAACGGTCCAGTCACATTTCAACTCCGACCCCACGATTGCCCCAGGCATACTGAGGATGCACTTCCATGACTGTTT CGTCCACGGATGCGACGGTTCCATCCTTCTCGACGGCGCCAACGCTGAGAAAACGGCCGTTCCCAATCTCCAGCTCAGAGGCTACGATGTGATCGACGAT GCCAAGACCCAGATCGAAGCAGCTTGCCCTGGCGTCGTCTCTTGTGCCGACATTCTTGCACTTGCTGCCCGCGACTCTGTTGCCGTGACACGTGGCCCAA GCTGGACGGTGCCGACCGGGAGGAGAGACGGAAGGGTGTCATTGGCATCGGACACAACCAATTTGCCGGCGTTCAATGACTCGGCCGCAGTTCAAATTAG CAAGTACACTCAGAAAGGACTCAACACTCAGGATCTTGTTGCTCTTTCTGGGGCCCACACAATAGGGACGGCTGCCTGCGCGGTATTCCGGTACAGGCTG TACAACTTTCCTGGCTCTGCTTCCGGCGCCGACCCAACGCTTGACCCGGCATTTGTTCCCCAACTGAGGGCGGTCTGCCCACAGAACGGAAATGCGGCAA GGAGGGTTGCTATGGACACTGGAAGCCCTAACCGATTCGACAATTCATACTACGCTAATCTCAGGAGCGGCCGAACTGTTCTTGAATCGGACTCTGTTCT GTGGACGGATGCCGGGACCAGAGTGATGGCACAGAGGTTCCTCGGGATCAGAGGATTGGCCGGCTTGACTTTCGCAGTGGAGTTCGCCAGATCGATGGTG AGGATGGGCAACATCGAAATCAAGAGCGGCGCCCAGGGTGAGATCCGGCGAGTCTGCTCCGCCGTCAACTGA
AA sequence Show only first row Show all	>Lus10007051 pacid=23153237 polypeptide=Lus10007051 locus=Lus10007051.g ID=Lus10007051.BGIv1.0 annot-version=v1.0 MSTLFVLWLVMFLANRSAVDAQGTRVGFYSTSCPRAESIVRATVQSHFNSDPTIAPGILRMHFHDCFVHGCDGSILLDGANAEKTAVPNLQLRGYDVIDD AKTQIEAACPGVVSCADILALAARDSVAVTRGPSWTVPTGRRDGRVSLASDTTNLPAFNDSAAVQISKYTQKGLNTQDLVALSGAHTIGTAACAVFRYRL YNFPGSASGADPTLDPAFVPQLRAVCPQNGNAARRVAMDTGSPNRFDNSYYANLRSGRTVLESDSVLWTDAGTRVMAQRFLGIRGLAGLTFAVEFARSMV RMGNIEIKSGAQGEIRRVCSAVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41480			Peroxidase superfamily protein...		Lus10007051 [exp]	0	1
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10022756 [exp]	3.5	0.9727
AT3G52710			unknown protein		Lus10017030 [exp]	5.5	0.9626
AT1G70420			Protein of unknown function (D...		Lus10030612 [exp]	8.7	0.9641
AT5G64120			Peroxidase superfamily protein...		Lus10007050 [exp]	11.6	0.9238
AT2G40600			appr-1-p processing enzyme fam...		Lus10029040 [exp]	13.2	0.9621
					Lus10027919 [exp]	14.3	0.9638
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10037205 [exp]	16.2	0.9633
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	17.0	0.9622
					Lus10009731 [exp]	18.0	0.9559
AT5G36930			Disease resistance protein (TI...		Lus10029921 [exp]	18.8	0.9522

Compare expression of checked genes

Lus10007051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.