Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64120 401 / 9e-141 Peroxidase superfamily protein (.1) AT2G41480 401 / 2e-140 Peroxidase superfamily protein (.1) AT5G39580 390 / 9e-137 Peroxidase superfamily protein (.1.2) AT5G64110 357 / 3e-123 Peroxidase superfamily protein (.1) AT5G64100 338 / 5e-116 Peroxidase superfamily protein (.1) AT4G25980 296 / 6e-99 Peroxidase superfamily protein (.1) AT5G17820 281 / 5e-94 Peroxidase superfamily protein (.1) AT1G77100 280 / 4e-93 Peroxidase superfamily protein (.1) AT3G01190 273 / 9e-91 Peroxidase superfamily protein (.1) AT4G11290 273 / 1e-90 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007051 [exp] 643 / 0 AT2G41480 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10020421 [exp] 420 / 2e-149 AT2G41480 266 / 9e-89 Peroxidase superfamily protein (.1) Lus10012684 [exp] 401 / 1e-140 AT2G41480 395 / 2e-138 Peroxidase superfamily protein (.1) Lus10020826 [exp] 384 / 5e-134 AT2G41480 375 / 1e-130 Peroxidase superfamily protein (.1) Lus10007050 [exp] 370 / 7e-130 AT5G64120 215 / 6e-69 Peroxidase superfamily protein (.1) Lus10015555 [exp] 360 / 1e-124 AT2G41480 432 / 9e-153 Peroxidase superfamily protein (.1) Lus10039681 [exp] 277 / 4e-92 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10027163 [exp] 274 / 1e-90 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10031548 [exp] 273 / 2e-90 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G125000 [exp] 470 / 3e-168 AT2G41480 419 / 7e-148 Peroxidase superfamily protein (.1) Potri.006G069600 [exp] 380 / 7e-133 AT2G41480 498 / 6e-179 Peroxidase superfamily protein (.1) Potri.018G131600 [exp] 362 / 1e-125 AT2G41480 478 / 4e-171 Peroxidase superfamily protein (.1) Potri.004G023200 [exp] 280 / 3e-93 AT3G01190 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.011G027300 [exp] 280 / 5e-93 AT3G01190 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.004G023100 [exp] 279 / 6e-93 AT3G01190 403 / 1e-141 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 279 / 7e-93 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.019G063201 [exp] 279 / 1e-92 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1) Potri.017G038100 [exp] 277 / 3e-92 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 276 / 1e-91 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10007052 pacid=23153232 polypeptide=Lus10007052 locus=Lus10007052.g ID=Lus10007052.BGIv1.0 annot-version=v1.0 ATGTCTACGTTGTTTGTGTTTTGGCTTGTGATGGTTCTGGCCAACAGGTCCGCAGTTGATGCCCAAGGGACTCGGGTAGGATTCTATTCCACTTCATGTC CACGAGCCGAGTCGATTGTTCGAGCAACGGTCCAGTCACATTTCAACTCCGACCCCACCATTGCCCCTGGCATACTGAGGATGCACTTCCATGACTGTTT CGTCCATGGATGCGACGGTTCCATCCTCCTCGATGGCGCCAACGCTGAGAAAACGGCAGTTCCCAATCTCCAGCTCCGAGGCTACGATGTGATTGACGAT GCCAAAACCCAGATCGAAGCAGCTTGCCCTGGCGTCGTTTCTTGCGCCGACATCCTAGCTCTTGCTGCCCGCGACTCTGTTGCCGTGACAAGTGGGCCAA GCTGGACGGTGCCGACAGGGAGGAGAGACGGGAGGGTGTCACTGGCATCGGACACTACTAATTTGCCGGCGTTCAATGACTCGGCCGCAGTTCAAATTAC CAAGTACACACAGAAAGGACTCAACACTCAGGATCTTGTTGCTCTCTCTGGGGCCCACACAATAGGAACGGCAGCCTGCGCGGTATTCCGGTACAGGCTG TACAACTTCCCGGGCTCTGCTTCCGGCGCCGACCCAACGCTCGACCCGGCATTTGTTCCCCAACTGAGGGCGGTCTGCCCACAGAACGGAAATGCGGCAA GGAGGGTGGCTATGGACACTGGAAGCCCTAACCGATTCGATAATTCATACTATGATAACTTGAGGAGCCGCGGCCGGACTGTTTTGGAATCGGACTCTGT TCTGTGGACGGATGCCGGGACCAGAGTGATGGCACAGAGGTTCCTCGGGATCAGAGGATTGGCCGGGTTGACGTTCGCTGTGGAGTTTGGAAGATCGATG GTGAGGATGGGGAATATCGAGATCAATAGCGGCGCCCAGGGTGAGATCCGGCGAGTCTGCTCCGCCGTCAACTGA
AA sequence Show only first row Show all	>Lus10007052 pacid=23153232 polypeptide=Lus10007052 locus=Lus10007052.g ID=Lus10007052.BGIv1.0 annot-version=v1.0 MSTLFVFWLVMVLANRSAVDAQGTRVGFYSTSCPRAESIVRATVQSHFNSDPTIAPGILRMHFHDCFVHGCDGSILLDGANAEKTAVPNLQLRGYDVIDD AKTQIEAACPGVVSCADILALAARDSVAVTSGPSWTVPTGRRDGRVSLASDTTNLPAFNDSAAVQITKYTQKGLNTQDLVALSGAHTIGTAACAVFRYRL YNFPGSASGADPTLDPAFVPQLRAVCPQNGNAARRVAMDTGSPNRFDNSYYDNLRSRGRTVLESDSVLWTDAGTRVMAQRFLGIRGLAGLTFAVEFGRSM VRMGNIEINSGAQGEIRRVCSAVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41480			Peroxidase superfamily protein...		Lus10007052 [exp]	0	1
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Lus10035566 [exp]	1.0	0.8754
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10019534 [exp]	3.5	0.8338
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10002770 [exp]	5.2	0.7819
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10043378 [exp]	6.9	0.8411
AT5G04010			F-box family protein (.1)		Lus10031031 [exp]	10.4	0.7742
AT5G15430			Plant calmodulin-binding prote...		Lus10021647 [exp]	10.8	0.7663
					Lus10028245 [exp]	19.2	0.7590
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10036610 [exp]	20.5	0.8067
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Lus10027648 [exp]	22.4	0.8020
AT4G28300			Protein of unknown function (D...		Lus10039827 [exp]	26.9	0.7192

Compare expression of checked genes

Lus10007052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.