Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30030 212 / 3e-66 Eukaryotic aspartyl protease family protein (.1) AT2G23945 205 / 2e-63 Eukaryotic aspartyl protease family protein (.1) AT4G30040 157 / 4e-45 Eukaryotic aspartyl protease family protein (.1) AT4G12920 110 / 8e-28 UND UNDEAD, Eukaryotic aspartyl protease family protein (.1) AT5G33340 103 / 4e-25 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT2G28030 96 / 1e-22 Eukaryotic aspartyl protease family protein (.1) AT3G25700 94 / 1e-21 Eukaryotic aspartyl protease family protein (.1.2) AT2G03200 93 / 2e-21 Eukaryotic aspartyl protease family protein (.1) AT5G45120 89 / 4e-20 Eukaryotic aspartyl protease family protein (.1) AT2G28010 87 / 1e-19 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020425 [exp] 164 / 2e-50 AT2G23945 144 / 6e-41 Eukaryotic aspartyl protease family protein (.1) Lus10019960 [exp] 167 / 4e-49 AT2G23945 256 / 5e-81 Eukaryotic aspartyl protease family protein (.1) Lus10031450 [exp] 164 / 6e-48 AT4G30030 231 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10015486 [exp] 162 / 2e-46 AT2G23945 248 / 3e-76 Eukaryotic aspartyl protease family protein (.1) Lus10011615 [exp] 148 / 1e-41 AT2G23945 224 / 5e-68 Eukaryotic aspartyl protease family protein (.1) Lus10023451 [exp] 144 / 4e-40 AT2G23945 232 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10031449 [exp] 140 / 1e-38 AT2G23945 219 / 3e-66 Eukaryotic aspartyl protease family protein (.1) Lus10004064 [exp] 119 / 3e-30 AT4G30040 156 / 3e-41 Eukaryotic aspartyl protease family protein (.1) Lus10020279 [exp] 117 / 4e-30 AT5G33340 393 / 3e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G179500 [exp] 249 / 2e-80 AT2G23945 412 / 3e-141 Eukaryotic aspartyl protease family protein (.1) Potri.018G106500 [exp] 117 / 1e-30 AT4G30030 150 / 2e-41 Eukaryotic aspartyl protease family protein (.1) Potri.014G114400 [exp] 103 / 3e-25 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 102 / 1e-24 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.012G118000 [exp] 97 / 7e-23 AT5G45120 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 96 / 2e-22 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.008G115900 [exp] 92 / 3e-21 AT3G25700 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.015G051800 [exp] 88 / 1e-19 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.018G014600 [exp] 85 / 1e-18 AT5G10770 371 / 1e-124 Eukaryotic aspartyl protease family protein (.1) Potri.015G113100 [exp] 85 / 1e-18 AT5G45120 588 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10007053 pacid=23153261 polypeptide=Lus10007053 locus=Lus10007053.g ID=Lus10007053.BGIv1.0 annot-version=v1.0 ATGGCTACGGAACAGCTAACATTCGAAACCTCCGACCAAGGCCTTGCAGTATTGCGTAACGTGTTATTCGGTTGTGGCCATGAGAATGTAGAAGCCGGTG CAAGGACTTGGACTGGTGTGTTCGGCCTCGGAAGCTCTCCTATCTCGGTCTTTGCAAAGCTTGGCAACCGATTCTCCTATTGCATCGGTAACATCACCGA CCCTATGTACAATTTCAACCGTCTGGCTCTAGGCGATACAGTGAGCCTGCAAGGCTACTCTAAGCCATTTCAGATACACAATTCCCACTACTATGTTAAT CTCGAGGGCATAAGCGTAGGCCAAGCCATGCTCGACATAGACCCCGCAACGTTCAAGAGGAAACCGTCTAATGGAGGGGTGATCATCGATTCTGGAACAG AATTTACGCATCTGCCTGAACTGGTATACAGTAAGGTAGTGTCGAGAATAAACAGGATGGTGGACGGGGTGCTGAAGCGACACAAAGATGAACGGTATCC GTGGGTGTTGTGTTACTATGGGGACGTTAGAGTGGACCTTCAAAGGTTTCCAAATGTTACATTCCATTTAACGGAAGAGGCGGATATGGTGGTGGATGCT GGAAGCTTGTTTTATCAGGCGGATGTGGAAACATTCTGCATTGCTATGAGGCCTTTACCGTCCGATGATTTACCTGCGATCTCGGTCATCGGGGTCATGG CTCAACAGTACTATAACCTCGCTTACGACATCGATAACAGAAGGATTTTTTTCCGAAGGACAGATTGTAAGCTCCTGGATACTTAA
AA sequence Show only first row Show all	>Lus10007053 pacid=23153261 polypeptide=Lus10007053 locus=Lus10007053.g ID=Lus10007053.BGIv1.0 annot-version=v1.0 MATEQLTFETSDQGLAVLRNVLFGCGHENVEAGARTWTGVFGLGSSPISVFAKLGNRFSYCIGNITDPMYNFNRLALGDTVSLQGYSKPFQIHNSHYYVN LEGISVGQAMLDIDPATFKRKPSNGGVIIDSGTEFTHLPELVYSKVVSRINRMVDGVLKRHKDERYPWVLCYYGDVRVDLQRFPNVTFHLTEEADMVVDA GSLFYQADVETFCIAMRPLPSDDLPAISVIGVMAQQYYNLAYDIDNRRIFFRRTDCKLLDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30030			Eukaryotic aspartyl protease f...		Lus10007053 [exp]	0	1
AT3G52520			unknown protein		Lus10004216 [exp]	8.7	0.8296
AT1G32920			unknown protein		Lus10001526 [exp]	10.2	0.7999
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039494 [exp]	14.4	0.7828
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10002511 [exp]	15.6	0.7684
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10002301 [exp]	18.2	0.7413
AT1G24590	AP2_ERF	ESR2, DRNL, SOB...	FOR SUPPRESSOR OF PHYTOCHROMEB...		Lus10017907 [exp]	18.3	0.7492
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10010943 [exp]	19.1	0.7882
AT5G15430			Plant calmodulin-binding prote...		Lus10015733 [exp]	19.2	0.8038
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10029280 [exp]	19.9	0.8064
					Lus10036058 [exp]	25.7	0.7295

Compare expression of checked genes

Lus10007053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.