Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10840 557 / 0 TIF3H1 translation initiation factor 3 subunit H1 (.1.2) AT5G23540 52 / 2e-07 Mov34/MPN/PAD-1 family protein (.1.2) AT5G05780 49 / 3e-06 RPN8A, AE3, ATHMOV34 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) AT3G11270 46 / 2e-05 MEE34 maternal effect embryo arrest 34, Mov34/MPN/PAD-1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020427 [exp] 666 / 0 AT1G10840 570 / 0.0 translation initiation factor 3 subunit H1 (.1.2) Lus10035470 [exp] 54 / 7e-08 AT5G23540 601 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10031085 [exp] 54 / 8e-08 AT5G23540 599 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10021746 [exp] 53 / 2e-07 AT5G23540 618 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10042663 [exp] 52 / 2e-07 AT5G23540 616 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10027775 [exp] 49 / 4e-06 AT5G05780 555 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Lus10035522 [exp] 49 / 4e-06 AT5G05780 550 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G233500 [exp] 587 / 0 AT1G10840 555 / 0.0 translation initiation factor 3 subunit H1 (.1.2) Potri.014G147100 [exp] 575 / 0 AT1G10840 545 / 0.0 translation initiation factor 3 subunit H1 (.1.2) Potri.002G127900 [exp] 54 / 4e-08 AT5G23540 567 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Potri.014G032900 [exp] 54 / 5e-08 AT5G23540 563 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Potri.010G192200 [exp] 45 / 3e-05 AT5G05780 560 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.008G065300 [exp] 45 / 3e-05 AT5G05780 568 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.008G065200 [exp] 44 / 9e-05 AT5G05780 568 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [flax] [poplar] JAB PF01398 [flax] [poplar] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Representative CDS sequence Show only first row Show all	>Lus10007054 pacid=23153224 polypeptide=Lus10007054 locus=Lus10007054.g ID=Lus10007054.BGIv1.0 annot-version=v1.0 ATGGCGACACCTCCAGCAACGAGGTCGTTCCTTCAGGTGGCAGCAACTGAGGAGGTTGCACCTCCTCTCCGTGTTGTTCAGATCGAAGGATTGGTGATGC TGAAGATTATCAAACACTGCAAGGAATTCTCTCCAGCTCTGGTCACTGGCCAACTTCTTGGGCTGGACGTTGGCAGCGTGCTTGAAGTAACCAACTGCTT CCCTTTCCCGATCAGAGAGGAAGATGAAGAGGTTGAGGCAGATGGTGCAAATTACCAGCTTGAGATGATGAGATGCTTGAGGGAGGTTAATGTCGACAAT AATACCGTCGGATGGTATCAGTCAACTTTGATGGGCTCTTTCCAAACAGTGGAGCTGATTGAAACATTCATGAATTACCAGGAAAACATTAAAAGATGTG TGTGCATCATTTATGATCCATCAAGATCAAGCCAGGGCGTCCTGGCATTCAAGGCTTTGAAGCTTTCTGATTCATTCATGGAGCTATATCGCAGTAACAA CTTCACTGGAGAGAAGCTGAGGGAGAAGAACTTGTCATGGGTGGACATTTTTGAGGAAATTCCTATCAAGGTTTCGAATTCTGCTCTTATCAGTGCCTTT ATGACGGGCCTGGAAGATGATGCTCCTGTCACCCAGTGTGACTATGACCGTCTGCAATTATCAACAAATCCCTTCTTGGAGAGAAGTGCTGAATTTCTGA TTGAATGCATGGACGATTTGTCAATGGAACAACAGAAGTTCCAATACTACCATAGGAACCTGTCACGCCAGCAAGCTCAACAACAAACATGGCTTCAAAA GAGAAGGGCTGAGAACATGACTCGCAAGGCTGCTGGTGAAGAGCCTTTGCCCGAGGAGGATCCTTCGAACCCAATATTCAAGCCAATTCCTGAGCCGTCG CGGTTGGATAGCTTCCTGATAACCAACCAAATTTCAAACTTCTGCAACCAAATCAATGGTTATGGCTTTACCTTACTCACCCGAGTTTCTATCACTGTTG CTTCTCTTCTGTTCAACATCCACAGCCTTGCTAGCATTTCCCTCAGCCTTCTCATACACACAGCGTCCACAACAACGATTCGTCGCTAA
AA sequence Show only first row Show all	>Lus10007054 pacid=23153224 polypeptide=Lus10007054 locus=Lus10007054.g ID=Lus10007054.BGIv1.0 annot-version=v1.0 MATPPATRSFLQVAATEEVAPPLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIREEDEEVEADGANYQLEMMRCLREVNVDN NTVGWYQSTLMGSFQTVELIETFMNYQENIKRCVCIIYDPSRSSQGVLAFKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAF MTGLEDDAPVTQCDYDRLQLSTNPFLERSAEFLIECMDDLSMEQQKFQYYHRNLSRQQAQQQTWLQKRRAENMTRKAAGEEPLPEEDPSNPIFKPIPEPS RLDSFLITNQISNFCNQINGYGFTLLTRVSITVASLLFNIHSLASISLSLLIHTASTTTIRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10840		TIF3H1	translation initiation factor ...		Lus10007054 [exp]	0	1
AT4G39690			unknown protein		Lus10016813 [exp]	1.0	0.8152
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015201 [exp]	6.7	0.7874
AT3G13460		ECT2	evolutionarily conserved C-ter...		Lus10020269 [exp]	7.3	0.7965
AT5G63110		RPD3B, CAT1, AX...	RNA-MEDIATED TRANSCRIPTIONAL S...		Lus10043337 [exp]	10.1	0.7839
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10020612 [exp]	11.2	0.8091
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10000970 [exp]	18.1	0.7885
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10018862 [exp]	19.6	0.7108
AT3G59630			diphthamide synthesis DPH2 fam...		Lus10009552 [exp]	21.6	0.7566
AT3G02530			TCP-1/cpn60 chaperonin family ...		Lus10033546 [exp]	25.5	0.7839
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10012940 [exp]	33.5	0.7681

Compare expression of checked genes

Lus10007054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.