Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16870 573 / 0 mitochondrial 28S ribosomal protein S29-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020429 [exp] 835 / 0 AT1G16870 585 / 0.0 mitochondrial 28S ribosomal protein S29-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G153900 [exp] 647 / 0 AT1G16870 586 / 0.0 mitochondrial 28S ribosomal protein S29-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF10236 [flax] [poplar] DAP3 Mitochondrial ribosomal death-associated protein 3
Representative CDS sequence Show only first row Show all	>Lus10007056 pacid=23153275 polypeptide=Lus10007056 locus=Lus10007056.g ID=Lus10007056.BGIv1.0 annot-version=v1.0 ATGATGTTAAGGCGCATCCTCAGAACAACGCTAACGAGATCCAAGGCCGACGATCCCTTTCTCCTACGGGGATGCTACTACTCGACCAAAGCAGGTGCGA AATCAACCCAGAAACCTCCGAAGAAATCCAACCCAAAGAAGCCGACTGACGAATCCGGTCTCGCCGCCTCCTCCGCCGACTCCGGAATCGATGAACGAGC TTTGCGAGCTCGTCTTCTAACCGAGGATGAGAAGAATCCATCTCTTGATGTAGGGCCCAACGGTAGACCTCTCTTCACTTCGACTCCCACCTTGTCTCAG CTCACCCGCAAAGATACCTGCTCCTATTTCAAATTCAGTAAGAAGGCATTGTATGCCGTGTTGCCGGAAGGTTTGCCCAATGGGATGTCGACGGAGTTTG AGGAGTCAATGCGGGAGTCTCTGATTGTTAGACAGAGTTTCTTGGATCTTCGTGATAACTTCAAGCGTGTTGTCGATCCTCCTCTGGATGGTAAAGCTGA GAGAACTGGTGCTTTGGACGCCATTTCTGTTTCATTTCCAGGTGTAAAAGTCCGAAAGCAGATTGTATTAGATGGTCCTTTAAGCTGTGGCAAGAGTATC GCATTGGCAATGCTTGTCCATTGGGCTCGTGATGAAGGTTGGCTGGTGTTTTATGCTCCTAGAGGATGGGAATGGACTCATGGTGGATATTTCTACAAGA ACCCACATACTGGATTATGGGATACCCCGCTTCAGGCAGAAAATATCCTCAAGGATTTCTTGAAATACAACGAATCCCAGACGAAGCAATTGCATTGTAA CATGTTTGATCCTATTCCACTTGGAGAAGGTGCTGGTGTTGGATTGATGAAAGGAGTCGAGTCCATGCCAGTTCCTGAAGGTTCAACTCTTTTTGACCTG GTTCAAATAGGAATCAAGCATACACATGCAGCAGTTGGAGTAGTTGTTCGATTGAGGAAAGAACTTTCGCTTGTGAAAGATGTTCCAGTTCTCTTTGCAA TTGATCAATATAATAGTTGGTTTACCTTCAGCGAGTATGAAGAGCCAATGACTCTGCACTCAACCAGACCAGTACATGCCAAAGAGGTTGCAACGGTAAA TGCTTTCAGGTCGATGATGCATAACGATATGATGGTGGGAGCTTTCTCTCATTCAACAGCGGTGGGAAAGCTACGACAAGATTTGCCAGATGTTCCTGTG GATGCTCGTGTTGATCTACCTCGCTATAACGTAGATGAAGCCGCTACTGTTTGTCATTACTACCTTAGGCAAAGATTAATAAACGCAGAAGCGTTCTCAG ATGAAAAGTGGAAGAGAGTGTTTTACGTGTGCAATGGAAATGGAAAGGAAATGAGATCCTTACTTCCGCTGATTCAGTAA
AA sequence Show only first row Show all	>Lus10007056 pacid=23153275 polypeptide=Lus10007056 locus=Lus10007056.g ID=Lus10007056.BGIv1.0 annot-version=v1.0 MMLRRILRTTLTRSKADDPFLLRGCYYSTKAGAKSTQKPPKKSNPKKPTDESGLAASSADSGIDERALRARLLTEDEKNPSLDVGPNGRPLFTSTPTLSQ LTRKDTCSYFKFSKKALYAVLPEGLPNGMSTEFEESMRESLIVRQSFLDLRDNFKRVVDPPLDGKAERTGALDAISVSFPGVKVRKQIVLDGPLSCGKSI ALAMLVHWARDEGWLVFYAPRGWEWTHGGYFYKNPHTGLWDTPLQAENILKDFLKYNESQTKQLHCNMFDPIPLGEGAGVGLMKGVESMPVPEGSTLFDL VQIGIKHTHAAVGVVVRLRKELSLVKDVPVLFAIDQYNSWFTFSEYEEPMTLHSTRPVHAKEVATVNAFRSMMHNDMMVGAFSHSTAVGKLRQDLPDVPV DARVDLPRYNVDEAATVCHYYLRQRLINAEAFSDEKWKRVFYVCNGNGKEMRSLLPLIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16870			mitochondrial 28S ribosomal pr...		Lus10007056 [exp]	0	1
AT1G16870			mitochondrial 28S ribosomal pr...		Lus10020429 [exp]	2.0	0.9175
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10020794 [exp]	3.9	0.9119
AT3G57490			Ribosomal protein S5 family pr...		Lus10009952 [exp]	4.0	0.9211
AT3G07770		Hsp89.1, AtHsp9...	HEAT SHOCK PROTEIN 90-6, HEAT ...		Lus10012329 [exp]	4.2	0.8970
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10029824 [exp]	7.7	0.9076
AT1G09830			Glycinamide ribonucleotide (GA...		Lus10013696 [exp]	8.9	0.8709
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Lus10015441 [exp]	9.2	0.8848
AT5G41970			Metal-dependent protein hydrol...		Lus10033229 [exp]	9.4	0.8882
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10032268 [exp]	9.7	0.8989
AT5G27395			Mitochondrial inner membrane t...		Lus10029978 [exp]	12.2	0.8331

Compare expression of checked genes

Lus10007056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.