Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29450 72 / 3e-17 SAUR-like auxin-responsive protein family (.1) AT1G29460 71 / 7e-17 SAUR-like auxin-responsive protein family (.1) AT1G29420 71 / 9e-17 SAUR-like auxin-responsive protein family (.1) AT1G29500 69 / 3e-16 SAUR-like auxin-responsive protein family (.1) AT1G29510 65 / 2e-14 SAUR68 SMALL AUXIN UPREGULATED 68, SAUR-like auxin-responsive protein family (.1) AT1G29490 62 / 1e-13 SAUR-like auxin-responsive protein family (.1) AT5G27780 62 / 3e-13 SAUR-like auxin-responsive protein family (.1) AT1G29430 60 / 2e-12 SAUR-like auxin-responsive protein family (.1) AT1G76190 58 / 5e-12 SAUR-like auxin-responsive protein family (.1) AT1G20470 57 / 3e-11 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020430 [exp] 176 / 1e-58 AT1G29460 66 / 5e-15 SAUR-like auxin-responsive protein family (.1) Lus10007059 [exp] 129 / 2e-40 AT1G29430 66 / 6e-15 SAUR-like auxin-responsive protein family (.1) Lus10020431 [exp] 123 / 4e-38 AT1G29430 69 / 2e-16 SAUR-like auxin-responsive protein family (.1) Lus10007060 [exp] 86 / 2e-22 AT1G29430 71 / 2e-16 SAUR-like auxin-responsive protein family (.1) Lus10007068 [exp] 82 / 2e-21 AT1G29510 68 / 1e-15 SMALL AUXIN UPREGULATED 68, SAUR-like auxin-responsive protein family (.1) Lus10020439 [exp] 82 / 3e-21 AT1G29510 67 / 5e-15 SMALL AUXIN UPREGULATED 68, SAUR-like auxin-responsive protein family (.1) Lus10007069 [exp] 78 / 9e-20 AT1G29430 69 / 3e-16 SAUR-like auxin-responsive protein family (.1) Lus10020440 [exp] 77 / 1e-19 AT1G29430 72 / 3e-17 SAUR-like auxin-responsive protein family (.1) Lus10007067 [exp] 77 / 2e-19 AT1G29430 69 / 4e-16 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G043400 [exp] 76 / 2e-18 AT5G27780 141 / 8e-44 SAUR-like auxin-responsive protein family (.1) Potri.009G141201 [exp] 67 / 2e-15 AT5G27780 132 / 3e-40 SAUR-like auxin-responsive protein family (.1) Potri.009G141251 [exp] 67 / 4e-15 AT1G29430 93 / 7e-25 SAUR-like auxin-responsive protein family (.1) Potri.009G141150 [exp] 64 / 5e-14 AT1G29450 131 / 5e-40 SAUR-like auxin-responsive protein family (.1) Potri.004G181400 [exp] 63 / 1e-13 AT1G29450 132 / 4e-40 SAUR-like auxin-responsive protein family (.1) Potri.017G043500 [exp] 59 / 3e-12 AT5G27780 120 / 1e-35 SAUR-like auxin-responsive protein family (.1) Potri.009G141100 [exp] 57 / 2e-11 AT1G29510 117 / 8e-35 SMALL AUXIN UPREGULATED 68, SAUR-like auxin-responsive protein family (.1) Potri.009G140900 [exp] 57 / 2e-11 AT1G29510 139 / 3e-43 SMALL AUXIN UPREGULATED 68, SAUR-like auxin-responsive protein family (.1) Potri.005G196850 [exp] 56 / 3e-10 AT1G29510 102 / 2e-27 SMALL AUXIN UPREGULATED 68, SAUR-like auxin-responsive protein family (.1) Potri.009G141000 [exp] 54 / 5e-10 AT1G29500 122 / 2e-36 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10007057 pacid=23153216 polypeptide=Lus10007057 locus=Lus10007057.g ID=Lus10007057.BGIv1.0 annot-version=v1.0 ATGGCAGTCCATGGAAAGCTTACGAAAGTGGTGAAGAAATGGCAACAGATTGCTGTATTGATGGGGAAGAAGAAGGGCTGGTTCGTGGTCTACTCGGTGG ACAGAAGGAGGTACGCTTTGCCGTTGGAGTTGTTGGAGAGGCAAATGTTCGTGGAGATGCTGAAGATGGCCGAGGATGAGTTTGGGCTCTCGAATCACCA ACATATTGTGTTTCCTTTCCACTCTGCTGTGATGGATCGCGTTATTGAGTTCTTGATTAGTAATAAGCAAGGAGCGTACCGAGACCAAGTCGTGATGATG ATGTCAGTTGGGTGTTCTTCTTTGAGTTGTAACTAG
AA sequence Show only first row Show all	>Lus10007057 pacid=23153216 polypeptide=Lus10007057 locus=Lus10007057.g ID=Lus10007057.BGIv1.0 annot-version=v1.0 MAVHGKLTKVVKKWQQIAVLMGKKKGWFVVYSVDRRRYALPLELLERQMFVEMLKMAEDEFGLSNHQHIVFPFHSAVMDRVIEFLISNKQGAYRDQVVMM MSVGCSSLSCN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29450			SAUR-like auxin-responsive pro...		Lus10007057 [exp]	0	1
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10012612 [exp]	1.4	0.6787
AT3G18170			Glycosyltransferase family 61 ...		Lus10032454 [exp]	9.1	0.6542
					Lus10004437 [exp]	11.1	0.6542
AT2G24370			Protein kinase protein with ad...		Lus10027593 [exp]	12.8	0.6542
AT3G08030			Protein of unknown function, D...		Lus10029502 [exp]	14.3	0.6542
AT5G02910			F-box/RNI-like superfamily pro...		Lus10000727 [exp]	15.7	0.6542
					Lus10039674 [exp]	16.9	0.6542
					Lus10021739 [exp]	18.1	0.6542
AT2G26490			Transducin/WD40 repeat-like su...		Lus10032868 [exp]	19.2	0.6542
AT1G30700			FAD-binding Berberine family p...		Lus10031080 [exp]	20.2	0.6542

Compare expression of checked genes

Lus10007057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.