Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56810 78 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G16930 74 / 2e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G60400 74 / 3e-14 F-box/RNI-like superfamily protein (.1) AT4G03220 72 / 1e-13 Protein with RNI-like/FBD-like domains (.1) AT5G22720 71 / 4e-13 F-box/RNI-like superfamily protein (.1.2) AT5G56420 69 / 8e-13 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT5G22670 68 / 3e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G78840 64 / 4e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G22700 64 / 5e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G02930 64 / 7e-11 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026190 [exp] 460 / 1e-162 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10042477 [exp] 437 / 7e-154 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10001507 [exp] 227 / 3e-71 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029357 [exp] 217 / 6e-67 AT3G28410 79 / 1e-15 F-box/RNI-like superfamily protein (.1) Lus10024696 [exp] 211 / 1e-64 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10002239 [exp] 209 / 1e-64 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1) Lus10024695 [exp] 205 / 8e-63 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10034161 [exp] 203 / 2e-62 AT1G66310 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10002819 [exp] 198 / 3e-60 AT5G02910 77 / 1e-15 F-box/RNI-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 144 / 1e-39 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 124 / 2e-32 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 120 / 7e-31 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104100 [exp] 95 / 1e-21 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 95 / 2e-21 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 92 / 2e-20 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G024200 [exp] 71 / 3e-13 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024300 [exp] 70 / 5e-13 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G002001 [exp] 62 / 1e-10 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.014G039700 [exp] 60 / 1e-09 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10007058 pacid=23153250 polypeptide=Lus10007058 locus=Lus10007058.g ID=Lus10007058.BGIv1.0 annot-version=v1.0 ATGTCCCCCGGAGTGGATTCCGCCGACAGGTTAAGCAATCTCCCGGACTCCATTCTTCATCGCATCCTTTCTCTTCTGGACACCAAATCCGCCGTTCAGA CGTCCGTACTATCCCGATCATGGAGGTGTCTGTGGAAATACCTTCCCGTTCTCGATCTTCATTATTGGTCTTGCGCCGACGAGTGGAGTTTCAGAACGTA CGTCAACAAGGTTCTGGCACTCCGCTATCCCGTCACTCTCAGCAAGCTCAGCTACGAGGACAGAGTGAATGCACTTGAAGAAGACAACAGTCTCTTTGTT AAAATCATGAAATATGCCGCCTCTCACGACATTCAACATCTATCGATACTCCTATTTCGTGAGTCGTTTTGGTCCTACGAAAAATTCTCTGATGTGCTTC ACTCGCTATCAGGTTGCAATCTCAAAACTCTACGAGTAGTCAATGTTTGTCTGGACAGTCGATTCGAGTCTTTTCGTTTCCAGCTGCTGACGACGTTGGA GTTGGAAGGGGCTATGTTCGTTCCTGATGATCCAGCGGGGCGTTTTGAACCTTTCTCTAATTTGCCCTCTCTGAAAACATTGGTGTTGGTTATGTGTCCT AGCTACTGCGAAGGCGTATTCAGGATTTGTGGAGAAAAGTTGCAGAGTTTGAAGTTGGATCATATGGACGTGTGCAAGATGGAGATATTTGCACCCAATC TCAAATCATTCACCCTTTGGAATGCTTGGAAGGAATTTGCATTTTTGAAGCTGGCACTTCCTTCCCTTGATCACTTTGATATTGCGGCAATTGACAGGAA AGAGTTCTTTGAGACTGACAAGAAAGATTGGGTGTTCTTGTTTCAAGGTCTTTATAATGTCAAATCGCTGACGCTGAATGATCGGATCATCGAGGCACTC GCTGATATTTCCAAATTTCTGGAAGAACAGCCGTCTCCTTTTAAAAAATTGGAGAAGTTGATTATTGAGTGCAACAACAAACCTCACAAAGTGGTGAACT CTGACAACATACCTTACAAGGTGGTGAATTACTTCTTTAAAGGATCTTTAGCAACAAATCAGAGTATCAAGTTTTCGGTGGTGGAGGAGGAAGTTTGGGA GGTGGAGGAGTAG
AA sequence Show only first row Show all	>Lus10007058 pacid=23153250 polypeptide=Lus10007058 locus=Lus10007058.g ID=Lus10007058.BGIv1.0 annot-version=v1.0 MSPGVDSADRLSNLPDSILHRILSLLDTKSAVQTSVLSRSWRCLWKYLPVLDLHYWSCADEWSFRTYVNKVLALRYPVTLSKLSYEDRVNALEEDNSLFV KIMKYAASHDIQHLSILLFRESFWSYEKFSDVLHSLSGCNLKTLRVVNVCLDSRFESFRFQLLTTLELEGAMFVPDDPAGRFEPFSNLPSLKTLVLVMCP SYCEGVFRICGEKLQSLKLDHMDVCKMEIFAPNLKSFTLWNAWKEFAFLKLALPSLDHFDIAAIDRKEFFETDKKDWVFLFQGLYNVKSLTLNDRIIEAL ADISKFLEEQPSPFKKLEKLIIECNNKPHKVVNSDNIPYKVVNYFFKGSLATNQSIKFSVVEEEVWEVEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56810			F-box/RNI-like/FBD-like domain...		Lus10007058 [exp]	0	1
AT1G75590			SAUR-like auxin-responsive pro...		Lus10007552 [exp]	5.5	0.7556
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10030956 [exp]	11.1	0.7050
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Lus10025059 [exp]	14.6	0.7056
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Lus10035050 [exp]	32.7	0.6950
AT4G02820			Pentatricopeptide repeat (PPR)...		Lus10042574 [exp]	33.9	0.7040
AT3G06270			Protein phosphatase 2C family ...		Lus10034009 [exp]	39.9	0.6397
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Lus10003681 [exp]	44.2	0.6870
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Lus10029414 [exp]	50.2	0.6838
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Lus10017886 [exp]	56.7	0.6803
AT2G44530			Phosphoribosyltransferase fami...		Lus10012074 [exp]	68.9	0.6758

Compare expression of checked genes

Lus10007058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.