Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18270 473 / 2e-166 CYP77A5P "cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene", cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020434 [exp] 644 / 0 AT3G18270 483 / 6e-171 "cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene", cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G054200 [exp] 539 / 0 AT3G18270 536 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene", cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene (.1) Potri.015G044400 [exp] 304 / 1e-101 AT3G18270 312 / 9e-105 "cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene", cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0227 [flax] [poplar] Enolase_N PF02746 [flax] [poplar] MR_MLE_N Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10007062 pacid=23153229 polypeptide=Lus10007062 locus=Lus10007062.g ID=Lus10007062.BGIv1.0 annot-version=v1.0 ATGATCTCTCTTGGGTCTCCCAATTTCTGCAAGCCCCGTTTCCCCAAACCCATTTCCACTCTCCGAACCATTGCGGCAGCAACAATCACACCAGAGACAG CTTCAGGATTCGGGTTCAAGAACCTGGCGGAGACCTTCACCGTAAATGTGCAGACAGCAGATAGCCAGCCATTAAATGTGCCTCTGATTGCCCCTTTCAC TATAGCCACTTCCAGGCTGGATCGGGTTGAGAATGTTGCGATTCGGATTGAGTTGAGTAATGGCTGTGTCGGATGGGGTGAAGCCCCAATTCTTCCCTTT GTTACTGCAGAGGATCAGCCTACAGCTCTGTCCATGGCTAGTCAAGCTTGTGAGGCGCTCAAGAACACTCGCCCTATGACTCTGGCCTCCGCTCTGAACA AGATCGGTGGCCTTCTTCCTGGCCATGAATTTGCTTCTTTTGAAATGGCCCTAATAGATGCTGCGGCTACAAGCATTGATGTACCTCTTTGGAGACTATT TGGTGGCGTTTCTGATACAGTAACTACTGATATAACAATTCCAATAACTACACCAGCTGATGCTGCTGAATTGGCTTCCAAGTATCGGGATCAAGGATTT AAAACCCTGAAGCTCAAGGTTGGAATGAATCTCAACGCCGACATACAAGTTCTTCAAGCAATCCGAGCAGTTCACCCCGATTGCTCTTTCATCTTGGATG CTAATGAGGGCTACAAGTCTGATGAAGCTATTCAAGTTCTTGAGAAATTACACGGGATAGGGGTGGTACCCATTCTTTTCGAGCAACCAGTCCATAGAGA CGACTGGGAAGGCCTTGGTCAAGTTACCCGTGTAGCAAAGCAAAAATATGGGACGTCAGTTGCAGCTGACGAAAGTTGTCGGAGTATAAGTGATGCGAAG AGAATAGCCAGTGATAGTCTTGCAGATGTTATTAACATAAAACTTGCCAAAGTTGGTGTATTGGCTGCACTTGAGATAATTGAGGAGGCGAGGGAGTCCG GGTTGGATCTGATGATCGGTGGTATGGTTGAGACCAGATTAGCTATGGGTTTTGCTGGTCACCTTGCTGCTGGTCTTGGATGTTTCAAGTTTGTTGATCT TGATACGCCACTCTTGCTGGCTGAAGATCCGGTATTTGAAGGTTATAAAGCTGATGGCGCGGTGTATGAGTTCTCGAATGCTAGAGGTCACGGAGGTTTC CTTCACTGGGGAAATATTACAGGTTGA
AA sequence Show only first row Show all	>Lus10007062 pacid=23153229 polypeptide=Lus10007062 locus=Lus10007062.g ID=Lus10007062.BGIv1.0 annot-version=v1.0 MISLGSPNFCKPRFPKPISTLRTIAAATITPETASGFGFKNLAETFTVNVQTADSQPLNVPLIAPFTIATSRLDRVENVAIRIELSNGCVGWGEAPILPF VTAEDQPTALSMASQACEALKNTRPMTLASALNKIGGLLPGHEFASFEMALIDAAATSIDVPLWRLFGGVSDTVTTDITIPITTPADAAELASKYRDQGF KTLKLKVGMNLNADIQVLQAIRAVHPDCSFILDANEGYKSDEAIQVLEKLHGIGVVPILFEQPVHRDDWEGLGQVTRVAKQKYGTSVAADESCRSISDAK RIASDSLADVINIKLAKVGVLAALEIIEEARESGLDLMIGGMVETRLAMGFAGHLAAGLGCFKFVDLDTPLLLAEDPVFEGYKADGAVYEFSNARGHGGF LHWGNITG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18270		CYP77A5P	"cytochrome P450, family 77, s...		Lus10007062 [exp]	0	1
AT4G15830			ARM repeat superfamily protein...		Lus10034168 [exp]	15.3	0.8364
AT1G63770			Peptidase M1 family protein (....		Lus10024641 [exp]	31.7	0.7771
AT5G44230			Pentatricopeptide repeat (PPR)...		Lus10014279 [exp]	38.7	0.7648
AT4G25240		SKS1	SKU5 similar 1 (.1)		Lus10031143 [exp]	61.4	0.7904
AT3G54750			unknown protein		Lus10015991 [exp]	71.5	0.7592
AT5G47770		FPS1	farnesyl diphosphate synthase ...		Lus10041057 [exp]	86.8	0.7448
AT5G55610			unknown protein		Lus10016608 [exp]	93.6	0.7421
AT5G13520			peptidase M1 family protein (....		Lus10040362 [exp]	104.6	0.7337
AT1G77580			Plant protein of unknown funct...		Lus10000186 [exp]	110.8	0.7462
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10004186 [exp]	111.8	0.7727

Compare expression of checked genes

Lus10007062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.