Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20510 117 / 2e-31 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20480 100 / 6e-25 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 97 / 1e-23 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT1G20490 95 / 3e-23 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 90 / 4e-21 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 72 / 6e-15 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 68 / 1e-13 AMP-dependent synthetase and ligase family protein (.1) AT5G63380 54 / 6e-09 AMP-dependent synthetase and ligase family protein (.1) AT1G65060 50 / 2e-07 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT3G21230 48 / 9e-07 4CL5 4-coumarate:CoA ligase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015998 [exp] 176 / 1e-52 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 162 / 1e-46 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015999 [exp] 102 / 2e-25 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10037934 [exp] 84 / 5e-19 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10038667 [exp] 83 / 8e-19 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2) Lus10021431 [exp] 74 / 1e-15 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 71 / 1e-14 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 71 / 1e-14 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 71 / 1e-14 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G248500 [exp] 124 / 1e-33 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.002G012800 [exp] 124 / 2e-33 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 80 / 8e-18 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.008G031500 [exp] 76 / 1e-16 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.017G112800 [exp] 70 / 2e-14 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 70 / 2e-14 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.003G099700 [exp] 67 / 2e-13 AT4G19010 634 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.006G169700 [exp] 54 / 6e-09 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.017G033600 [exp] 51 / 7e-08 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G049500 [exp] 51 / 9e-08 AT1G65060 781 / 0.0 4-coumarate:CoA ligase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10007063 pacid=23153252 polypeptide=Lus10007063 locus=Lus10007063.g ID=Lus10007063.BGIv1.0 annot-version=v1.0 ATGGTGAAGTGGGTGGCTCATGAGGAGGTCAGTGTTAGTACAGACAGAGGTAGTAAAGAAAGAAAGAAGGAAGCTTTCAGCGGAGATTCCGCCAAAGTCC CAGCTAACGTAACCCAATCCCTCGACGTCACAACCTTTCTCAAGCTCACCACGGCAAGACCGCCTTCATCGACGCCGCCACCTCACTTTCCGAGACCTAT GGTCCCCCGTCGACTCCCTCGCCACGCATCTCACGAAACCATGGGATTCCGAAAGGGACACGTCGTCCTCCTCCTATCCCCTAATTCCATATCCTTCCCA ATCGTTTGCCTCGCCGTCATGTCCATCGGCACAGTAATCACCACCACCAATCCTCTCAACACACCTGGCGAAATTGCCAAACGGATCTCCGATTCCAAGG CTTCGTTGGCTTTCACCGTCCCCGAATTAGTCCCCAAACTCGCCGGTTCGAACCCTAACCTCCCGATCGTCCTAATCGATAGAGAGAATCAGGACTACAA CTACAACGCAAGTAGACTCTAG
AA sequence Show only first row Show all	>Lus10007063 pacid=23153252 polypeptide=Lus10007063 locus=Lus10007063.g ID=Lus10007063.BGIv1.0 annot-version=v1.0 MVKWVAHEEVSVSTDRGSKERKKEAFSGDSAKVPANVTQSLDVTTFLKLTTARPPSSTPPPHFPRPMVPRRLPRHASHETMGFRKGHVVLLLSPNSISFP IVCLAVMSIGTVITTTNPLNTPGEIAKRISDSKASLAFTVPELVPKLAGSNPNLPIVLIDRENQDYNYNASRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10007063 [exp]	0	1
					Lus10001257 [exp]	14.5	0.6734
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10007503 [exp]	51.4	0.6229
AT5G50600		ATHSD1	hydroxysteroid dehydrogenase 1...		Lus10032556 [exp]	61.5	0.6296
AT2G28390			SAND family protein (.1)		Lus10021472 [exp]	105.7	0.5803
AT2G30480			unknown protein		Lus10019109 [exp]	115.3	0.5824
AT5G62575		SDH7B, SDH7	succinate dehydrogenase 7B, su...		Lus10004231 [exp]	122.5	0.5532
AT5G56660		ILL2	IAA-leucine resistant (ILR)-li...		Lus10029200 [exp]	125.1	0.5355
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10003995 [exp]	149.0	0.5374
AT1G02790		PGA4	polygalacturonase 4 (.1)		Lus10016823 [exp]	219.9	0.4996
AT1G03430		AHP5	histidine-containing phosphotr...		Lus10029623 [exp]	220.2	0.5305

Compare expression of checked genes

Lus10007063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.