Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33630 619 / 0 EX1 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2) AT1G27510 209 / 1e-58 Protein of unknown function (DUF3506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020435 [exp] 540 / 0 AT4G33630 655 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2) Lus10039967 [exp] 343 / 1e-108 AT1G27510 621 / 0.0 Protein of unknown function (DUF3506) (.1) Lus10027696 [exp] 342 / 6e-108 AT1G27510 635 / 0.0 Protein of unknown function (DUF3506) (.1) Lus10042125 [exp] 140 / 7e-35 AT1G27510 358 / 7e-116 Protein of unknown function (DUF3506) (.1) Lus10002370 [exp] 92 / 6e-20 AT1G27510 164 / 2e-45 Protein of unknown function (DUF3506) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G043100 [exp] 775 / 0 AT4G33630 674 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2) Potri.012G079700 [exp] 359 / 7e-115 AT1G27510 599 / 0.0 Protein of unknown function (DUF3506) (.1) Potri.015G075000 [exp] 353 / 2e-112 AT1G27510 582 / 0.0 Protein of unknown function (DUF3506) (.1) Potri.012G082300 [exp] 46 / 4e-05 ND / Potri.015G078100 [exp] 44 / 0.0002 AT1G06110 48 / 3e-06 SKP1/ASK-interacting protein 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12014 [flax] [poplar] DUF3506 Domain of unknown function (DUF3506)
Representative CDS sequence Show only first row Show all	>Lus10007064 pacid=23153274 polypeptide=Lus10007064 locus=Lus10007064.g ID=Lus10007064.BGIv1.0 annot-version=v1.0 ATGGCTTCGATTTCGGCCCCGACTCCTCCCGTTCGCAACCTCATCTTCCACAGCTCTCACCGCCACCCTAAACGACGCCGTTCCTCCCTCTCCCCTTCTC CTTCCTCCTCTAGGTTTCCCGATTCTTCTCTCTGTCGCTGTACCAATTCATCTTCCTCCTCGTCGGATAATCAGGCCTGGCGATGGGACGCTGTGATTCA GGACGTATTCAAAAGCGCGATGAAGACTTTCGATTCTTTTATCGGCAATCGACCGCCGGATGGCCTGGATAATGGAGATATTGTTGAAAGAGCGTGCCAC GTAGGACGTGAAGAGCAAAGAAGAGGAGGCGAGGAGTGGGACTGGGACCGGTGGAAGAATCATTTCGAGGAAGTCGATGACCAGGAGCGACTCGTCTCAG TGTTGAAGTCTCAGTTGAGTTCTGCTGTGAATAGCGAGGATTATGGAGATGCTTCTAGGATAAAGGTTGCACTTGCTGCTGCTGCAACAAATGACACTGT TGGTAAAGTGATAAGGAATCTGTTGAAAGCAGTAGCTGAAGAGCGTTATCAGGATGCAGCTTTCTTGCGGGATCATGCTGGTGCTGGATTGGTTGGATGG TGGTCTGGAATCTCTGATGAAGTTTGTGATCCTCATGGCTTAATTGTTCGCATAACTGCAGAACATGGGAGATATGTTGCAAGAAGCTATAGCCCACGCC AGCTTGCAACAGCTACAACTGGTGTTCCACTGTTCGAGATCTTTCTTATTATGAATAAAAAAGGAGAATATAAGCAACAGGCTGTTTACCTGAAAAGGAA AGAGCGTCCCCAAGATCCTTCAATGCTGTCATCCAAATCATCAAGTGGACCAAGTCGCTTAAGTCGTTCTGGACCAACCCAAGAGGAAGATGATCTTTTT GTTGTGACCTCTGATGAGACTGAGGATGATGATAATACAGAAGATGGGTCTGATCCAGCTGAGGGTTTTCCTGGTTTTAACAATCTCTTTCGAGATATGA TACCTGGTGTCAAAGTTAAGGTTTTAAAAGTTACAACACCAGCAATGATGGACAGGGATTTCATAGCGAAGGTGATAGATGATTTGGTGGATGATGATGA AGAAGAAGAAGAAGAGGAAGAGGAAGAAGAAGATGATGATGAGGAGGAAGATGAGGATGAAAGTTCTGAAGGCGAAGATGATATTAAGGGGGAAAGTGAG GAAGAAAGAAACGAGATTGATATAGATGCTGCCAGTGAGATGATTGATAATGTAGCTAATGGCGAAATATCAATCAAGGTTGTGGTGGAAGGTCTTGCAC ACAAATCTTCAGCCTCTGCGCATGGTGAAGATTGTGTCAGGGTACCTGCTAAGTTGGAGAGAAAGGGGCGCATGTCATTTTCTTTGTCAATAGAGAAAGA GATCAACAGGCAGGATGCTGCTGCCAAGGAGTTGATTGCTGCGGAGAAAAAAGGAAAGCTTCAAGGTCAACGCAGTCTGGACCAAGTGATGTTTGACCTT GCTAAATTCATTGGTAAAGAGAAGATTCCGTTGAAGGTCTTGAAAGATCTCAGTGAGCTTCTAAGTGTTAGTCTCAGTCAAGCTCAAAACCGTCAACCAC TGTCAGGCTCTACAACTTTTCATCGAATTGATGTATCAGTATCTCCAGATCCTTTGACTGGACTGTATATTGGTGCACGTGGTTTGTACACTTCAGAAGT GATACACTTGCAACGGAAAGTTGGCCAATGGAAAGAGGATAGTGGGTCTAACTCGAAGGAACCTCAGAGACTTGAGTTCTATGAATATGTTGAAGCTGTA AAGTTAACTGGAGATCCTTATGTTCCCGCTGGAGAGGTGGCATTTCGTGCCAAAGTGGGTAAAAGATACCAGCTTCCACACAAAGGTATCATTCCTGAAG AATTTGGAGTGATCGCTAGATATAAAGGACAAGGCAGGCTTTCTGATCCAGGATTTGGGAACCCTCGTTGGGTTGATGGTGAACTTGTTATTCTCGATGG AAAGTACGTTAAAGGAGGACCCGTTATCGGGTTTGTGTATTGGGCTCCTGAATATCACTTCCTGGTGTTCTTCAACCGCCTTAGGCTTCCGTAG
AA sequence Show only first row Show all	>Lus10007064 pacid=23153274 polypeptide=Lus10007064 locus=Lus10007064.g ID=Lus10007064.BGIv1.0 annot-version=v1.0 MASISAPTPPVRNLIFHSSHRHPKRRRSSLSPSPSSSRFPDSSLCRCTNSSSSSSDNQAWRWDAVIQDVFKSAMKTFDSFIGNRPPDGLDNGDIVERACH VGREEQRRGGEEWDWDRWKNHFEEVDDQERLVSVLKSQLSSAVNSEDYGDASRIKVALAAAATNDTVGKVIRNLLKAVAEERYQDAAFLRDHAGAGLVGW WSGISDEVCDPHGLIVRITAEHGRYVARSYSPRQLATATTGVPLFEIFLIMNKKGEYKQQAVYLKRKERPQDPSMLSSKSSSGPSRLSRSGPTQEEDDLF VVTSDETEDDDNTEDGSDPAEGFPGFNNLFRDMIPGVKVKVLKVTTPAMMDRDFIAKVIDDLVDDDEEEEEEEEEEEDDDEEEDEDESSEGEDDIKGESE EERNEIDIDAASEMIDNVANGEISIKVVVEGLAHKSSASAHGEDCVRVPAKLERKGRMSFSLSIEKEINRQDAAAKELIAAEKKGKLQGQRSLDQVMFDL AKFIGKEKIPLKVLKDLSELLSVSLSQAQNRQPLSGSTTFHRIDVSVSPDPLTGLYIGARGLYTSEVIHLQRKVGQWKEDSGSNSKEPQRLEFYEYVEAV KLTGDPYVPAGEVAFRAKVGKRYQLPHKGIIPEEFGVIARYKGQGRLSDPGFGNPRWVDGELVILDGKYVKGGPVIGFVYWAPEYHFLVFFNRLRLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10007064 [exp]	0	1
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10027693 [exp]	2.6	0.8627
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Lus10005908 [exp]	4.2	0.8548
AT5G13950			unknown protein		Lus10031980 [exp]	4.2	0.8526
AT3G56040		UGP3	UDP-glucose pyrophosphorylase ...		Lus10007512 [exp]	4.9	0.8428
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10015272 [exp]	5.3	0.8284
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10040695 [exp]	7.4	0.8431
AT5G62650			Tic22-like family protein (.1)		Lus10039294 [exp]	8.4	0.8397
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10038819 [exp]	9.4	0.8335
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10034055 [exp]	11.3	0.8524
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10011581 [exp]	11.4	0.8338

Compare expression of checked genes

Lus10007064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.